halophFGD

Basic Information

Locus ID: Ag10G01896

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Replication factor-A C terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	206670043	206689410	-	Ag10G01896

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.89	34,939.88 Da	46.69	91.01	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04476	RPA1_DBD_C	128	280	4.52734E-25	IPR013955
Pfam	PF08646	Replication factor-A C terminal domain	129	243	4.1E-14	IPR013955
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	112	249	2.23E-23	IPR012340
Gene3D	G3DSA:2.40.50.140	-	96	273	3.6E-30	-
MobiDBLite	mobidb-lite	consensus disorder prediction	273	318	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	273	295	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	303	318	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017239612.1	PREDICTED: uncharacterized protein LOC108212396 [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5B9L1	Rep_fac-A_C domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_008303 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	9.444606	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.8672	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	6.250478	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.087598	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.925104	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.912813	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.993863	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.180752	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	11.763473	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	10.144559	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	11.671084	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	10.054347	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	12.872354	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.738133	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.211318	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.871067	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.054885	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	21.267315	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	22.549265	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.453951	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	10.285452	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.755905	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.404644	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.86795	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.962616	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.781363	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	30.726704	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.992906	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	19.836712	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	12.816911		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	20.903433		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	21.725391		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	18.680223		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	21.788202		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.524242		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	52.223503		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	28.263863		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	33.667088		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.095332	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.715655	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.138465	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.167983	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	28.854347	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	72.931442	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	67.71064	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	16.662258	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	57.514626	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	48.122616	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	31.02446	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	38.769344	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11242, gene_19988, gene_9588
Amaranthaceae	Atriplex hortensis	13	Ah001361, Ah001371, Ah002563, Ah006984, Ah006985, Ah007876 ... Ah010862, Ah025226, Ah029290, Ah030577, Ah037589, Ah038029, Ah038313
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg149, Sbi_jg150, Sbi_jg16705, Sbi_jg3120, Sbi_jg33012 ... Sbi_jg34953, Sbi_jg39132, Sbi_jg40907, Sbi_jg40945, Sbi_jg4372, Sbi_jg52704, Sbi_jg52799, Sbi_jg56535, Sbi_jg59927, Sbi_jg6013, Sbi_jg6051, Sbi_jg6079, Sbi_jg6080, Sbi_jg62897
Amaranthaceae	Salicornia europaea	16	Seu_jg10453, Seu_jg17430, Seu_jg17914, Seu_jg1932 ... Seu_jg19683, Seu_jg20729, Seu_jg21730, Seu_jg23726, Seu_jg24231, Seu_jg24232, Seu_jg25610, Seu_jg26476, Seu_jg28167, Seu_jg3128, Seu_jg5300, Seu_jg6452
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00024462
Amaranthaceae	Suaeda glauca	10	Sgl03380, Sgl08498, Sgl31135, Sgl31147, Sgl32416, Sgl36490 ... Sgl37710, Sgl44281, Sgl49042, Sgl74206
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005026, gene:ENSEOMG00000015694 ... gene:ENSEOMG00000015873, gene:ENSEOMG00000034435
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0003620, CQ.Regalona.r1.8BG0010240
Apiaceae	Apium graveolens	27	Ag10G01033, Ag10G01574, Ag10G01896, Ag11G03153, Ag11G04618 ... Ag1G01595, Ag1G01599, Ag2G00391, Ag2G01149, Ag2G01625, Ag3G01857, Ag3G01971, Ag3G02116, Ag3G02639, Ag3G02752, Ag4G02157, Ag5G01058, Ag5G01367, Ag6G02577, Ag7G00861, Ag7G00882, Ag9G01197, Ag9G02116, Ag9G02235, AgUnG00818, AgUnG01095, AgUnG01450
Arecaceae	Cocos nucifera	2	COCNU_13G005920, scaffold010294G000060
Poaceae	Echinochloa crus-galli	7	AH01.5146, BH01.1939, BH02.822, BH09.2202, BH09.2414 ... CH01.2160, CH02.811
Poaceae	Oryza coarctata	1	Oco15G006230
Poaceae	Oryza sativa	8	LOC_Os05g02080.1, LOC_Os11g01460.1, LOC_Os11g38310.1 ... LOC_Os11g41180.1, LOC_Os11g44840.1, LOC_Os11g47400.1, LOC_Os12g26670.1, LOC_Os12g38520.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G191500, gene-BS78_05G005400 ... gene-BS78_05G239400, gene-BS78_05G271300, gene-BS78_05G282000
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0201723, Pt_Chr0201724, Pt_Chr0201726, Pt_Chr0201806 ... Pt_Chr0501697, Pt_Chr0501742, Pt_Chr0602034
Poaceae	Sporobolus alterniflorus	2	Chr19G015510, Chr27G003730
Poaceae	Thinopyrum elongatum	10	Tel1E01G147700, Tel1E01G147800, Tel1E01G242200 ... Tel1E01G245800, Tel1E01G253400, Tel2E01G486300, Tel4E01G387800, Tel6E01G338100, Tel7E01G398200, Telscf1201G000300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1BG023090, gene_TRIDC2AG046570 ... gene_TRIDC3AG028860, gene_TRIDC5BG032950, gene_TRIDC6BG030650, gene_TRIDC7BG033130
Solanaceae	Lycium barbarum	3	gene-LOC132600651, gene-LOC132619582, gene-LOC132621884
Solanaceae	Solanum chilense	7	SOLCI000818800, SOLCI000928800, SOLCI004930500 ... SOLCI004985800, SOLCI005662500, SOLCI006437700, SOLCI007519000
Solanaceae	Solanum pennellii	6	gene-LOC107003768, gene-LOC107019434, gene-LOC107019527 ... gene-LOC107020428, gene-LOC107024868, gene-LOC114077490