Basic Information
Locus ID:
Ag10G01894
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 206628467 | 206633094 | - | Ag10G01894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 57,981.98 Da | 53.62 | 71.69 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 467 | 510 | 2.20949E-18 | - |
| Pfam | PF13639 | Ring finger domain | 467 | 510 | 3.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 456 | 516 | 1.2E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 437 | 515 | 4.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 468 | 509 | 9.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 468 | 510 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 113 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45290.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017257967.1 | PREDICTED: uncharacterized protein LOC108227369 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q90972 | E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus OX=9031 GN=RNF13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AVZ4 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030278 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.816938 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.366779 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.769249 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.06456 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.935873 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.310743 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.841385 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 21.509386 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.94722 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.969246 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.352573 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.95699 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.089303 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.698085 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.513093 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.180443 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.390742 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.63623 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.995405 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.872818 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.029301 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.944022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.959143 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.283417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.407683 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.598543 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.917339 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.619591 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.379002 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.530193 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.372286 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.609995 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.58077 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.113688 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.438168 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.948055 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 18.664324 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.181976 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.820285 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.933556 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.568399 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.113346 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 29.376038 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.505737 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 35.615578 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.113018 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 33.516659 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.95332 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.052591 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.802004 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31588 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10568 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014177 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25438, Sbi_jg9282 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19312 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011100 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41851, Sgl46652 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009845, gene:ENSEOMG00000033288 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023360, CQ.Regalona.r1.8BG0019020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30179730, pistato.v30266840 |
| Apiaceae | Apium graveolens | 2 | Ag10G01530, Ag10G01894 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005660 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703668, gene-LOC120103728 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.813.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G08313 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2489 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2626 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.115 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001015, Pov_00016981 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31997, Lb7G35341 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3800, BH07.3622, CH07.3697 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149190, gene-QOZ80_2BG0205080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0625100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026254 |
| Poaceae | Oryza coarctata | 2 | Oco03G024390, Oco04G024850 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g34190.1, LOC_Os02g55520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G307500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206247, Pt_Chr0602172 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000410, Chr09G017520, Chr0G032750, Chr13G001700 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G643800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG054150, gene_TRIDC6BG063220 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G362000.1, TraesCS6B02G395600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192250_P002, Zm00001eb257960_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39909 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17339 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g23880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.112, evm.TU.Scaffold_11_RagTag.45 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25242, nbisL1-mrna-7142 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19609, nbisL1-mrna-4323 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14515, nbisL1-mrna-4983 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.354, evm.TU.utg000008l.1311 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000088, Maker00010264 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1872, nbisL1-mrna-233 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22086, nbisL1-mrna-22267 |
| Salicaceae | Populus euphratica | 3 | populus_peu05659, populus_peu12289, populus_peu31850 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603076, gene-LOC132645841 |
| Solanaceae | Solanum chilense | 2 | SOLCI001873600, SOLCI004796900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008316, gene-LOC107024373 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9038 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1090 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04150.v3.1 |