halophFGD

Basic Information

Locus ID: Ag10G01890

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Leucine rich repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	206530253	206535212	+	Ag10G01890

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.24	70,850.54 Da	37.41	98.29	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	355	606	6.2E-33	IPR000719
SUPERFAMILY	SSF52058	L domain-like	39	216	7.56E-29	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	355	612	4.71E-55	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	315	428	1.5E-17	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	179	229	8.3E-8	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	27	178	4.6E-34	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	430	626	1.9E-41	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	351	616	30.449596	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	88	110	7.480934	IPR001611

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G43020.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017254424.1	PREDICTED: probable inactive receptor kinase At5g67200 [Daucus carota subsp. sativus]
Swiss-Prot	Q93Y06	Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana OX=3702 GN=At5g67200 PE=1 SV=1
TrEMBL	A0A164WFT2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020909 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.16465	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.658108	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.32402	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.351156	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.462474	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.434034	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.947077	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.510534	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	44.002037	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	41.039879	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	46.568085	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	40.544014	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	26.203846	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	29.157715	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.905154	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.352947	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	17.542711	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	9.499159	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.841483	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.675268	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.340139	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.798117	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.683298	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.001863	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.673848	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.877045	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	17.692629	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	6.394259	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.390763	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.435895		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.308138		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.40918		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.062916		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.543089		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.379427		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.373319		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.234908		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	29.529371	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.039459	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.176578	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.136634	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.195148	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.072648	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.372519	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.616543	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.283064	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.376017	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10677, jg11597, jg17410, jg40005
Aizoaceae	Mesembryanthemum crystallinum	1	gene_16699
Amaranthaceae	Atriplex hortensis	2	Ah027412, Ah036968
Amaranthaceae	Beta vulgaris	2	BVRB_1g015710, BVRB_6g127270
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg39405, Sbi_jg52819, Sbi_jg54941
Amaranthaceae	Salicornia europaea	1	Seu_jg14925
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010193, GOSA_00025927
Amaranthaceae	Suaeda glauca	4	Sgl14219, Sgl19365, Sgl33905, Sgl39273
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000000735, gene:ENSEOMG00000015492 ... gene:ENSEOMG00000035737, gene:ENSEOMG00000048326
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0018260, CQ.Regalona.r1.1BG0005790 ... CQ.Regalona.r1.6AG0025340, CQ.Regalona.r1.6BG0026870
Anacardiaceae	Pistacia vera	2	pistato.v30044890, pistato.v30205810
Apiaceae	Apium graveolens	4	Ag10G01890, Ag4G01111, Ag5G00299, Ag9G00650
Arecaceae	Cocos nucifera	2	COCNU_08G004860, COCNU_08G004870
Arecaceae	Phoenix dactylifera	1	gene-LOC103709375
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.1016.V1.1, AsparagusV1_08.1805.V1.1
Asteraceae	Flaveria trinervia	3	Ftri18G07737, Ftri18G30776, Ftri9G31801
Brassicaceae	Arabidopsis thaliana	3	AT3G50230.1, AT5G43020.1, AT5G67200.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003161m.g.v1.0, Thhalv10003753m.g.v1.0 ... Thhalv10010170m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g07790.v2.2, Sp2g29470.v2.2, Sp5g11930.v2.2
Brassicaceae	Brassica nigra	4	BniB02g060560.2N, BniB04g042170.2N, BniB05g047440.2N ... BniB06g014780.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1809, Ceq05G1344
Casuarinaceae	Casuarina glauca	2	Cgl03G1948, Cgl05G1350
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g06080
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g25660
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-1237, nbisL1-mrna-7102, nbisL1-mrna-8830
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2100, evm.TU.LG06.397
Plantaginaceae	Plantago ovata	2	Pov_00023883, Pov_00027520
Plumbaginaceae	Limonium bicolor	4	Lb3G20817, Lb4G25513, Lb7G34435, Lb7G34459
Poaceae	Echinochloa crus-galli	3	AH09.2517, BH09.2747, CH09.2941
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_4AG0301530, gene-QOZ80_4BG0332250
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0204590.1
Poaceae	Lolium multiflorum	1	gene-QYE76_046700
Poaceae	Oryza coarctata	3	Oco07G017570, Oco08G016980, Oco13G010700
Poaceae	Oryza sativa	1	LOC_Os04g55620.1
Poaceae	Paspalum vaginatum	1	gene-BS78_06G260200
Poaceae	Sporobolus alterniflorus	4	Chr23G002390, Chr25G001940, Chr26G016960, Chr30G001910
Poaceae	Thinopyrum elongatum	2	Tel2E01G869900, Tel3E01G659200
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG072080, gene_TRIDC2BG078010 ... gene_TRIDC6AG059770
Poaceae	Triticum aestivum	3	TraesCS2A02G512500.1, TraesCS2B02G540400.2 ... TraesCS2D02G513900.1
Poaceae	Zea mays	1	Zm00001eb068440_P001
Poaceae	Zoysia japonica	3	nbis-gene-23029, nbis-gene-6032, nbis-gene-6033
Poaceae	Zoysia macrostachya	3	Zma_g20563, Zma_g22100, Zma_g22101
Portulacaceae	Portulaca oleracea	6	evm.TU.LG03.697, evm.TU.LG04.1040, evm.TU.LG05.1587 ... evm.TU.LG05.542, evm.TU.LG12.1066, evm.TU.LG25.785
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g15890
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.60424.14, evm.TU.60424.15 ... evm.TU.Scaffold_3_RagTag.150, evm.TU.Scaffold_6_RagTag.1847, evm.TU.Scaffold_7_RagTag.761
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17293, nbisL1-mrna-19199
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13978, nbisL1-mrna-19241, nbisL1-mrna-8428
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11927, nbisL1-mrna-6098, nbisL1-mrna-6613
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.607, evm.TU.utg000011l.1129 ... evm.TU.utg000019l.1015
Rhizophoraceae	Kandelia obovata	3	Maker00007436, Maker00010817, Maker00012411
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-15486, nbisL1-mrna-6416, nbisL1-mrna-8265
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10023, nbisL1-mrna-2208, nbisL1-mrna-3243
Salicaceae	Populus euphratica	2	populus_peu14417, populus_peu23367
Solanaceae	Lycium barbarum	2	gene-LOC132622094, gene-LOC132627831
Solanaceae	Solanum chilense	2	SOLCI004408700, SOLCI007338400
Solanaceae	Solanum pennellii	2	gene-LOC107011236, gene-LOC107018424
Tamaricaceae	Reaumuria soongarica	2	STRG.6495_chr03_-, gene_1751
Tamaricaceae	Tamarix chinensis	2	TC04G1769, TC04G2567
Zosteraceae	Zostera marina	4	Zosma02g13870.v3.1, Zosma03g27340.v3.1, Zosma03g27350.v3.1 ... Zosma05g16360.v3.1