halophFGD

Basic Information

Locus ID: Ag10G01889

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Topless-related protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	206324577	206334100	-	Ag10G01889

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.40	109,708.83 Da	36.78	81.78	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	892	926	0.0022	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	494	532	0.23	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	455	489	0.0012	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	452	926	4.89E-41	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	344	449	6.23E-9	IPR036322
Gene3D	G3DSA:2.130.10.10	-	546	699	5.7E-11	IPR015943
Gene3D	G3DSA:2.130.10.10	-	707	949	5.7E-24	IPR015943
Gene3D	G3DSA:2.130.10.10	-	285	545	2.1E-31	IPR015943
SMART	SM00668	ctlh	34	92	6.3E-13	IPR006595
SMART	SM00320	WD40_4	492	533	0.024	IPR001680
SMART	SM00667	Lish	4	36	4.6E-4	IPR006594
SMART	SM00320	WD40_4	342	381	0.7	IPR001680
SMART	SM00320	WD40_4	887	926	2.4E-5	IPR001680
SMART	SM00320	WD40_4	448	489	1.5E-5	IPR001680
SMART	SM00320	WD40_4	538	579	8.1	IPR001680
SMART	SM00320	WD40_4	402	442	7.7	IPR001680
SMART	SM00320	WD40_4	804	841	250.0	IPR001680
SMART	SM00320	WD40_4	582	622	12.0	IPR001680
SMART	SM00320	WD40_4	844	884	2.0	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	894	926	9.467419	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	894	926	11.310488	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	34	92	13.054236	IPR006595
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	455	498	11.510997	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	455	493	8.887423	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	600	631	9.071468	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	4	36	9.769512	IPR006594
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	476	490	-	IPR019775

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15880.1	WUS-interacting protein 2.
RefSeq	XP_017241843.1	PREDICTED: topless-related protein 4-like isoform X6 [Daucus carota subsp. sativus]
Swiss-Prot	Q27GK7	Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2
TrEMBL	A0A6P6SJX6	topless-related protein 4-like isoform X2 OS=Coffea arabica OX=13443 GN=LOC113692212 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.418661	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.97635	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.340702	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.153275	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.303358	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.484893	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.158492	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.644741	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.640458	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.793015	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.914972	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.514153	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.588563	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.50391	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.025699	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.205709	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.380194	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.205761	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.579287	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.65749	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.216086	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.416425	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.511644	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.384651	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.245254	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.148088	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.039372		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.199927		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.465932		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.198585		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.095261		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.217733		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.132347		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.136466	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.272166	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.25195	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.165308	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.773118	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.898213	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.984086	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.072534	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.37912	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.47481	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.529171	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg13488, jg18249, jg18268, jg24027, jg25438, jg25460, jg4697 ... jg26543, jg29961, jg36984
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10386, gene_10619, gene_21401, gene_21419
Amaranthaceae	Atriplex hortensis	3	Ah005700, Ah010441, Ah014307
Amaranthaceae	Beta vulgaris	3	BVRB_4g076250, BVRB_8g193940, BVRB_9g219140
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11625, Sbi_jg17198, Sbi_jg25644, Sbi_jg46779 ... Sbi_jg46781, Sbi_jg61805, Sbi_jg9465
Amaranthaceae	Salicornia europaea	4	Seu_jg19151, Seu_jg20872, Seu_jg20874, Seu_jg460
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005133, GOSA_00010992, GOSA_00015387
Amaranthaceae	Suaeda glauca	8	Sgl24430, Sgl29605, Sgl41993, Sgl46768, Sgl56356, Sgl56388 ... Sgl61886, Sgl61919
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011286, gene:ENSEOMG00000019274 ... gene:ENSEOMG00000038854, gene:ENSEOMG00000043305, gene:ENSEOMG00000048108, gene:ENSEOMG00000050136
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0007660, CQ.Regalona.r1.4BG0007850 ... CQ.Regalona.r1.7BG0009300, CQ.Regalona.r1.8AG0022300, CQ.Regalona.r1.8BG0020140, CQ.Regalona.r1.9AG0015260
Anacardiaceae	Pistacia vera	7	pistato.v30081820, pistato.v30099130, pistato.v30129150 ... pistato.v30233880, pistato.v30250460, pistato.v30250470, pistato.v30254890
Apiaceae	Apium graveolens	8	Ag10G01889, Ag4G01641, Ag5G00157, Ag6G00855, Ag7G00556 ... Ag7G01576, Ag9G01174, Ag9G01188
Arecaceae	Cocos nucifera	10	COCNU_01G017940, COCNU_07G002990, COCNU_08G005510 ... COCNU_09G000290, COCNU_10G002010, COCNU_11G000720, COCNU_11G008070, COCNU_16G001730, COCNU_16G003850, scaffold007249G000010
Arecaceae	Phoenix dactylifera	11	gene-LOC103698154, gene-LOC103706469, gene-LOC103706477 ... gene-LOC103706497, gene-LOC103707931, gene-LOC103711465, gene-LOC103711491, gene-LOC103713030, gene-LOC103715883, gene-LOC103717021, gene-LOC120105697
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.106.V1.1, AsparagusV1_01.1131.V1.1 ... AsparagusV1_03.3122.V1.1, AsparagusV1_05.132.V1.1, AsparagusV1_05.3276.V1.1, AsparagusV1_08.115.V1.1
Asteraceae	Flaveria trinervia	9	Ftri15G09924, Ftri16G18463, Ftri18G22231, Ftri18G22477 ... Ftri1G19714, Ftri7G31324, Ftri8G02263, Ftri9G26698, FtriNA18121
Brassicaceae	Arabidopsis thaliana	5	AT1G15750.1, AT1G80490.2, AT3G15880.2, AT3G16830.1 ... AT5G27030.2
Brassicaceae	Eutrema salsugineum	7	Thhalv10003550m.g.v1.0, Thhalv10006622m.g.v1.0 ... Thhalv10012501m.g.v1.0, Thhalv10018037m.g.v1.0, Thhalv10019939m.g.v1.0, Thhalv10019944m.g.v1.0, Thhalv10024263m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g14040.v2.2, Sp2g21040.v2.2, Sp3g14210.v2.2 ... Sp3g15070.v2.2, Sp5g35310.v2.2, Sp6g34310.v2.2, Sp7g14550.v2.2
Brassicaceae	Brassica nigra	11	BniB01g047880.2N, BniB02g078890.2N, BniB03g026420.2N ... BniB04g004650.2N, BniB05g027650.2N, BniB06g041080.2N, BniB06g051460.2N, BniB07g028530.2N, BniB07g053080.2N, BniB07g053910.2N, BniB08g003920.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq02G0325, Ceq02G0352, Ceq04G2380, Ceq04G2381, Ceq06G0596 ... Ceq06G1142, Ceq09G1934
Casuarinaceae	Casuarina glauca	8	Cgl02G0367, Cgl04G1158, Cgl04G1159, Cgl04G2584, Cgl04G2585 ... Cgl06G0616, Cgl06G1190, Cgl09G2115
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno02g11470, gene.Cymno03g03690, gene.Cymno13g01790 ... gene.Cymno17g05000, gene.Cymno18g05380
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g18130, gene.Thate02g06650, gene.Thate09g04540
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-5457, nbisL1-mrna-704, nbisL1-mrna-8146 ... nbisL1-mrna-8253
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.769, evm.TU.LG03.1795, evm.TU.LG03.2505 ... evm.TU.LG07.933, evm.TU.LG11.1250
Plantaginaceae	Plantago ovata	6	Pov_00003814, Pov_00007215, Pov_00007333, Pov_00020197 ... Pov_00035267, Pov_00039245
Plumbaginaceae	Limonium bicolor	6	Lb1G03842, Lb1G06589, Lb1G06617, Lb3G18283, Lb4G21947 ... Lb6G31728
Poaceae	Echinochloa crus-galli	9	AH01.4312, AH02.990, AH08.405, BH01.4618, BH02.1138 ... BH08.415, CH01.4928, CH02.1162, CH08.490
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0005320, gene-QOZ80_1BG0053950 ... gene-QOZ80_3AG0241470, gene-QOZ80_3BG0286640, gene-QOZ80_8AG0618460, gene-QOZ80_8BG0645950
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0253400.1, HORVU.MOREX.r3.4HG0391150.1 ... HORVU.MOREX.r3.7HG0695720.1
Poaceae	Lolium multiflorum	4	gene-QYE76_048005, gene-QYE76_052118, gene-QYE76_069212 ... gene-QYE76_069222
Poaceae	Oryza coarctata	6	Oco01G006840, Oco02G007160, Oco05G008470, Oco06G008770 ... Oco15G002700, Oco16G002720
Poaceae	Oryza sativa	3	LOC_Os01g15020.1, LOC_Os03g14980.1, LOC_Os08g06480.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G414900, gene-BS78_03G104900 ... gene-BS78_07G054000, gene-BS78_07G054100
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102076, Pt_Chr0102097, Pt_Chr0604056, Pt_Chr0605327
Poaceae	Sporobolus alterniflorus	12	Chr01G029820, Chr02G026100, Chr03G002050, Chr04G000280 ... Chr05G003850, Chr07G000330, Chr08G003020, Chr12G009710, Chr16G001690, Chr17G001590, Chr20G011500, Chr29G011110
Poaceae	Thinopyrum elongatum	3	Tel3E01G303700, Tel4E01G384600, Tel7E01G511700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG024050, gene_TRIDC3BG027960 ... gene_TRIDC4AG011380, gene_TRIDC4BG039040, gene_TRIDC7AG041110, gene_TRIDC7BG031090
Poaceae	Triticum aestivum	9	TraesCS3A02G173300.1, TraesCS3B02G204200.3 ... TraesCS3D02G179800.3, TraesCS4A02G083300.2, TraesCS4B02G220900.3, TraesCS4D02G221200.1, TraesCS7A02G296100.6, TraesCS7B02G189300.1, TraesCS7D02G293500.1
Poaceae	Zea mays	5	Zm00001eb011010_P001, Zm00001eb127680_P004 ... Zm00001eb333590_P001, Zm00001eb398420_P001, Zm00001eb415530_P001
Poaceae	Zoysia japonica	3	nbis-gene-2224, nbis-gene-32424, nbis-gene-7274
Poaceae	Zoysia macrostachya	5	Zma_g1618, Zma_g22518, Zma_g4003, Zma_g7413, Zma_g9745
Portulacaceae	Portulaca oleracea	8	evm.TU.LG06.1280, evm.TU.LG07.1780, evm.TU.LG07.1797 ... evm.TU.LG11.625, evm.TU.LG15.1375, evm.TU.LG15.1394, evm.TU.LG18.1282, evm.TU.LG20.604
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g04070, gene.Posoc07g01330, gene.Posoc10g04060
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.58, evm.TU.Scaffold_11_RagTag.657 ... evm.TU.Scaffold_18_RagTag.335, evm.TU.Scaffold_1_RagTag.86, evm.TU.Scaffold_2_RagTag.2082, evm.TU.Scaffold_4_RagTag.2293
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-12874, nbisL1-mrna-25148, nbisL1-mrna-28170 ... nbisL1-mrna-2895, nbisL1-mrna-7275, nbisL1-mrna-8190
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-11286, nbisL1-mrna-14193, nbisL1-mrna-17193 ... nbisL1-mrna-21312, nbisL1-mrna-3308, nbisL1-mrna-5161
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12280, nbisL1-mrna-13665, nbisL1-mrna-16498 ... nbisL1-mrna-5038, nbisL1-mrna-5172
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000005l.36, evm.TU.utg000008l.1347 ... evm.TU.utg000009l.41, evm.TU.utg000023l.228, evm.TU.utg000033l.39
Rhizophoraceae	Kandelia obovata	6	Maker00000014, Maker00005668, Maker00008522, Maker00011416 ... Maker00014662, Maker00019026
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12997, nbisL1-mrna-16734, nbisL1-mrna-1837 ... nbisL1-mrna-987
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-14461, nbisL1-mrna-16135, nbisL1-mrna-22211 ... nbisL1-mrna-77, nbisL1-mrna-8336
Salicaceae	Populus euphratica	11	populus_peu02633, populus_peu04730, populus_peu04731 ... populus_peu05742, populus_peu11115, populus_peu12945, populus_peu12946, populus_peu13327, populus_peu15646, populus_peu16212, populus_peu33477
Solanaceae	Lycium barbarum	6	gene-LOC132603150, gene-LOC132633000, gene-LOC132633066 ... gene-LOC132635387, gene-LOC132636158, gene-LOC132646001
Solanaceae	Solanum chilense	5	SOLCI000856800, SOLCI002474200, SOLCI005587800 ... SOLCI006336000, SOLCI007513400
Solanaceae	Solanum pennellii	6	gene-LOC107004473, gene-LOC107013633, gene-LOC107014300 ... gene-LOC107026193, gene-LOC107027199, gene-LOC107028481
Tamaricaceae	Reaumuria soongarica	4	STRG.12160_chr02_-, gene_10945, gene_10958, gene_17174
Tamaricaceae	Tamarix chinensis	3	TC02G0882, TC08G2273, TC10G1281
Zosteraceae	Zostera marina	4	Zosma02g02590.v3.1, Zosma02g16750.v3.1, Zosma03g23160.v3.1 ... Zosma05g21200.v3.1