Basic Information
Locus ID:
Ag10G01885
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 206210047 | 206215920 | + | Ag10G01885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 43,238.09 Da | 31.74 | 89.90 | -0.04 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26600.1 | Glycosyl hydrolase superfamily protein. | 0 |
| RefSeq | XP_017258862.1 | PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Daucus carota subsp. sativus] | 0 |
| Q9ZQG9 | Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana OX=3702 GN=At2g27500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161ZX99 | Glucan endo-1,3-beta-D-glucosidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020915 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.180027 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.900068 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.685112 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.847452 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.524048 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.725389 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.47575 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.712705 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.916403 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.499548 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.654903 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.987873 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.484039 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.840488 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 32.048969 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.60545 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.38084 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.044258 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.462524 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 45.096371 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 41.0891 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 33.767021 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.204582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.551598 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.364529 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.894215 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.504915 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.100924 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.531939 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.509421 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.136026 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.646636 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 33.21051 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.604589 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 35.841377 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 30.940392 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.180831 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.413923 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.236119 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.390244 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.060371 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 40.189014 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.216179 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.688642 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.774992 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 45.054031 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.047485 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.844521 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.328505 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.536741 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13500, jg18240, jg31698 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26207, gene_8972 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010570, Ah014322 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g194130, BVRB_9g219580 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11571, Sbi_jg25662, Sbi_jg46512, Sbi_jg9501 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19129, Seu_jg20821 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005170, GOSA_00010979 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42006, Sgl46782, Sgl55921, Sgl61928 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010950, gene:ENSEOMG00000016929 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7BG0009870, CQ.Regalona.r1.8AG0022160 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30254980 |
| Apiaceae | Apium graveolens | 2 | Ag10G01885, AgUnG00265 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G016870, scaffold012863G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697703, gene-LOC103708738, gene-LOC120108138 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2489.V1.1, AsparagusV1_08.725.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G21044, Ftri18G33186, Ftri7G12347, Ftri8G33421 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26600.1, AT3G15800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002341m.g.v1.0, Thhalv10020865m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g14120.v2.2, Sp4g09380.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g049070.2N, BniB07g053940.2N, BniB08g032510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0316, Ceq06G0609 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0327, Cgl06G0630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01840 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32450, gene.Thate06g14930 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.482, evm.TU.LG07.943 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005506, Pov_00015493 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37182, Lb1G03849, Lb1G03851, Lb7G34358 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.2249, AH07.740, BH06.1991, BH06.2035, BH07.871 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0105310, gene-QOZ80_2BG0158780 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0572160.1, HORVU.MOREX.r3.7HG0720100.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021377, gene-QYE76_034992 |
| Poaceae | Oryza coarctata | 4 | Oco03G004670, Oco04G005230, Oco11G012600, Oco12G012660 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g10660.1, LOC_Os06g40490.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G076900, gene-BS78_10G186500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202106 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G029920, Chr05G007650, Chr06G033000, Chr0G007940 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G325300, Tel7E01G642000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG023280, gene_TRIDC6BG028150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G164100.1, TraesCS6B02G188000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb235850_P001, Zm00001eb386520_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10069, nbis-gene-41051 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15146, Zma_g30793, Zma_g33045 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG06.1249, evm.TU.LG07.1776, evm.TU.LG11.597 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25440 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_18_RagTag.419, evm.TU.Scaffold_4_RagTag.2300 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25141, nbisL1-mrna-28101 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13589, nbisL1-mrna-2624 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5046, nbisL1-mrna-7857 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1351, evm.TU.utg000023l.203 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000421, Maker00018840 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1833, nbisL1-mrna-7276 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21195, nbisL1-mrna-22330 |
| Salicaceae | Populus euphratica | 5 | populus_peu05755, populus_peu11122, populus_peu12137 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600714, gene-LOC132603164, gene-LOC132626118 |
| Solanaceae | Solanum chilense | 3 | SOLCI002705100, SOLCI004209300, SOLCI006179100 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004801, gene-LOC107022643, gene-LOC107024175 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10145, gene_8974 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2204, TC10G1303 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03920.v3.1, Zosma05g28630.v3.1 |