halophFGD

Basic Information

Locus ID: Ag10G01837

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: WEE1

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	203971195	203975722	-	Ag10G01837

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.59	56,603.39 Da	39.06	83.33	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	248	492	2.3E-49	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	241	494	1.48E-59	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	239	328	6.0E-30	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	329	496	1.6E-39	-
SMART	SM00220	serkin_6	248	492	1.8E-45	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	248	492	37.21978	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	254	277	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	365	377	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K06632 (wee1-like protein kinase [EC:2.7.11.1])

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G02970.1	WEE1 kinase homolog. Protein kinase that negatively regulates the entry into mitosis.
RefSeq	XP_017237695.1	PREDICTED: wee1-like protein kinase [Daucus carota subsp. sativus]
Swiss-Prot	Q8L4H0	Wee1-like protein kinase OS=Arabidopsis thaliana OX=3702 GN=WEE1 PE=1 SV=1
TrEMBL	A0A162ANH8	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012399 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.817223	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.960495	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.112045	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.093193	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.187668	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.027967	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.53354	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.349175	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.773952	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.816271	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.027735	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.392979	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	6.118558	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.974618	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.083751	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.567283	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.727033	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.64127	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.348154	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.289784	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.510897	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.40038	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.879719	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.330815	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.988408	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.966706	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.013243	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.509489	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.178851	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.036197		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.066037		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.818009		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.040988	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.137422	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.092421	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.196329	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.323816	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.504471	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.428374	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg37919, jg37920
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5194
Amaranthaceae	Atriplex hortensis	1	Ah029928
Amaranthaceae	Beta vulgaris	1	BVRB_7g164020
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg1415, Sbi_jg1416, Sbi_jg35156
Amaranthaceae	Salicornia europaea	2	Seu_jg3320, Seu_jg3321
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003513, GOSA_00003514
Amaranthaceae	Suaeda glauca	2	Sgl73757, Sgl77263
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006992, gene:ENSEOMG00000033542 ... gene:ENSEOMG00000039374
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.7AG0013850
Anacardiaceae	Pistacia vera	1	pistato.v30009580
Apiaceae	Apium graveolens	2	Ag10G01837, Ag2G02540
Arecaceae	Cocos nucifera	1	scaffold035457G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103705828, gene-LOC120103898
Asteraceae	Flaveria trinervia	1	Ftri15G22839
Brassicaceae	Arabidopsis thaliana	1	AT1G02970.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007445m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g01960.v2.2
Brassicaceae	Brassica nigra	2	BniB02g001000.2N, BniB03g000300.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0925
Casuarinaceae	Casuarina glauca	2	Cgl05G2424, Cgl06G0953
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g07450
Dunaliellaceae	Dunaliella salina	1	Dusal.1302s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g20150
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.307, evm.TU.LG08.1309
Plantaginaceae	Plantago ovata	1	Pov_00008263
Plumbaginaceae	Limonium bicolor	1	Lb1G07581
Poaceae	Echinochloa crus-galli	4	AH02.223, AH07.306, BH07.405, CH03.4512
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0100940, gene-QOZ80_2BG0154220
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0555240.1
Poaceae	Lolium multiflorum	1	gene-QYE76_020113
Poaceae	Oryza coarctata	2	Oco03G001980, Oco04G001840
Poaceae	Oryza sativa	1	LOC_Os02g04240.1
Poaceae	Paspalum vaginatum	1	gene-BS78_04G030400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0201444, Pt_Chr0201453
Poaceae	Sporobolus alterniflorus	4	Chr06G035220, Chr0G011580, Chr0G011900, Chr15G026580
Poaceae	Thinopyrum elongatum	1	Tel6E01G225700
Poaceae	Triticum dicoccoides	2	gene_TRIDC6AG012930, gene_TRIDC6BG018050
Poaceae	Triticum aestivum	3	TraesCS6A02G099900.1, TraesCS6B02G128100.1 ... TraesCS6D02G082400.1
Poaceae	Zea mays	1	Zm00001eb209170_P001
Poaceae	Zoysia japonica	1	nbis-gene-33781
Poaceae	Zoysia macrostachya	1	Zma_g12159
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.149, evm.TU.LG04.603
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g21490
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_9_RagTag.835
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-21186, nbisL1-mrna-21216, nbisL1-mrna-21389
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19951
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-18464
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000003l.573
Rhizophoraceae	Kandelia obovata	1	Maker00009772
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-1550
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-5216
Salicaceae	Populus euphratica	2	populus_peu27228, populus_peu31213
Solanaceae	Lycium barbarum	1	gene-LOC132611032
Solanaceae	Solanum chilense	1	SOLCI000203000
Solanaceae	Solanum pennellii	1	gene-LOC107029703
Tamaricaceae	Reaumuria soongarica	1	gene_9797
Tamaricaceae	Tamarix chinensis	1	TC08G0610
Zosteraceae	Zostera marina	1	Zosma05g03180.v3.1