halophFGD

Basic Information

Locus ID: Ag10G01835

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Autophagy-related protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	203918873	203924617	-	Ag10G01835

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.32	45,332.79 Da	36.94	80.61	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	276	300	0.013	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	56	306	5.33E-30	IPR036322
Gene3D	G3DSA:2.130.10.10	-	60	393	2.3E-20	IPR015943
SMART	SM00320	WD40_4	218	257	0.036	IPR001680
SMART	SM00320	WD40_4	260	301	0.078	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	1	39	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	12	38	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence.
RefSeq	XP_017243008.1	PREDICTED: autophagy-related protein 18a [Daucus carota subsp. sativus]
Swiss-Prot	Q93VB2	Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1
TrEMBL	A0A067JW43	Autophagy-related protein 18a OS=Jatropha curcas OX=180498 GN=JCGZ_13893 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	65.101067	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	60.498032	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	63.824825	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	68.465935	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	64.709236	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	83.046806	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	74.717255	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	90.183006	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	58.818439	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	57.256145	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	58.650383	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	56.990841	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	52.372173	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	51.415745	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.85231	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	21.634022	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	22.740305	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	35.684906	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.012045	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	35.314617	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	44.835686	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.231531	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	32.162243	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	31.445499	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	28.543364	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	40.450306	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	31.62924	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	34.308769	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	33.318707	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	19.446228		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	21.288342		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	21.147537		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	46.453926		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	26.226315		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	47.217442		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	30.292105		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	23.933344		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	24.456322		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	35.657673	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	38.790489	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	31.323368	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	49.911057	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	48.436386	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	56.920841	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	58.309223	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	43.726467	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	62.206509	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	34.103172	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	38.196613	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.972088	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10095, jg34063, jg35211, jg8871
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10418, gene_24398, gene_6321
Amaranthaceae	Atriplex hortensis	3	Ah005758, Ah029935, Ah032174
Amaranthaceae	Beta vulgaris	2	BVRB_2g038550, BVRB_7g164090
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1411, Sbi_jg17114, Sbi_jg30094, Sbi_jg35161 ... Sbi_jg43543, Sbi_jg61660
Amaranthaceae	Salicornia europaea	3	Seu_jg18359, Seu_jg3326, Seu_jg379
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003508, GOSA_00004134
Amaranthaceae	Suaeda glauca	7	Sgl24510, Sgl24523, Sgl29690, Sgl66126, Sgl70436, Sgl73754 ... Sgl77260
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006243, gene:ENSEOMG00000011629 ... gene:ENSEOMG00000015551, gene:ENSEOMG00000020895, gene:ENSEOMG00000029774, gene:ENSEOMG00000034296, gene:ENSEOMG00000039340, gene:ENSEOMG00000049890
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0005350, CQ.Regalona.r1.2BG0004460 ... CQ.Regalona.r1.4AG0008270, CQ.Regalona.r1.4BG0008410, CQ.Regalona.r1.7AG0013820, CQ.Regalona.r1.7BG0015720
Anacardiaceae	Pistacia vera	2	pistato.v30009560, pistato.v30083820
Apiaceae	Apium graveolens	4	Ag10G01835, Ag10G02709, Ag4G01795, Ag7G01603
Arecaceae	Cocos nucifera	5	COCNU_04G004930, COCNU_04G012530, COCNU_16G003310 ... COCNU_16G005530, scaffold001400G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103707285, gene-LOC103715269, gene-LOC103716696 ... gene-LOC120110184
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.3016.V1.1, AsparagusV1_05.585.V1.1 ... AsparagusV1_05.923.V1.1, AsparagusV1_07.746.V1.1, AsparagusV1_Unassigned.145.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G26838, Ftri3G18597, Ftri8G10558
Brassicaceae	Arabidopsis thaliana	4	AT2G40810.1, AT2G47720.1, AT3G56440.1, AT3G62770.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005977m.g.v1.0, Thhalv10006031m.g.v1.0 ... Thhalv10016737m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g23130.v2.2, Sp5g00750.v2.2, Sp5g06070.v2.2
Brassicaceae	Brassica nigra	4	BniB01g004580.2N, BniB06g052230.2N, BniB06g061440.2N ... BniB08g071050.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0008, Ceq06G0926, Ceq06G0927
Casuarinaceae	Casuarina glauca	2	Cgl02G0012, Cgl06G0954
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g00960, gene.Cymno03g13440, gene.Cymno18g00910
Dunaliellaceae	Dunaliella salina	1	Dusal.0227s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g08740, gene.Thate05g01250, gene.Thate08g11430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1863, nbisL1-mrna-6269
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1649, evm.TU.LG04.314
Plantaginaceae	Plantago ovata	4	Pov_00008267, Pov_00024850, Pov_00024851, Pov_00036311
Plumbaginaceae	Limonium bicolor	6	Lb1G02500, Lb1G07582, Lb1G07625, Lb2G12921, Lb4G21554 ... Lb4G21561
Poaceae	Echinochloa crus-galli	12	AH02.4425, AH02.517, AH03.4014, AH05.1109, BH02.4465 ... BH02.535, BH03.311, BH05.1378, CH02.4513, CH02.596, CH05.1309, CH07.165
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0011110, gene-QOZ80_1AG0045660 ... gene-QOZ80_1BG0059710, gene-QOZ80_1BG0095650, gene-QOZ80_5AG0403330, gene-QOZ80_5BG0451710, gene-QOZ80_7AG0581220, gene-QOZ80_7BG0612320
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0026100.1, HORVU.MOREX.r3.3HG0234270.1 ... HORVU.MOREX.r3.3HG0313730.1, HORVU.MOREX.r3.4HG0380910.1
Poaceae	Lolium multiflorum	6	gene-QYE76_009815, gene-QYE76_018187, gene-QYE76_038861 ... gene-QYE76_038862, gene-QYE76_049936, gene-QYE76_057676
Poaceae	Oryza coarctata	6	Oco01G002680, Oco01G029290, Oco02G002730, Oco02G030490 ... Oco13G015400, Oco14G016230
Poaceae	Oryza sativa	4	LOC_Os01g07400.1, LOC_Os01g70780.1, LOC_Os05g07710.3 ... LOC_Os07g47410.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G051700, gene-BS78_03G394100 ... gene-BS78_09G066300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0107882, Pt_Chr0207424, Pt_Chr0306736, Pt_Chr0501698 ... Pt_Chr0501743, Pt_Chr0600710
Poaceae	Sporobolus alterniflorus	11	Chr01G011680, Chr02G001700, Chr02G001770, Chr02G019440 ... Chr03G004930, Chr03G023340, Chr05G010410, Chr05G032780, Chr08G000030, Chr08G018660, Chr20G010820
Poaceae	Thinopyrum elongatum	5	Tel1E01G209700, Tel2E01G245900, Tel3E01G166700 ... Tel3E01G717400, Tel4E01G322300
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG014430, gene_TRIDC1BG019650 ... gene_TRIDC3AG011460, gene_TRIDC3AG064120, gene_TRIDC3BG015410, gene_TRIDC3BG072040, gene_TRIDC4AG017410, gene_TRIDC4BG034370
Poaceae	Triticum aestivum	9	TraesCS1A02G112700.1, TraesCS1B02G132900.1 ... TraesCS1D02G114300.1, TraesCS3A02G095300.1, TraesCS3A02G453200.1, TraesCS3B02G110900.1, TraesCS3B02G490900.1, TraesCS3D02G095500.1, TraesCS4B02G179000.2
Poaceae	Zea mays	4	Zm00001eb123160_P001, Zm00001eb142210_P001 ... Zm00001eb336470_P001, Zm00001eb363500_P001
Poaceae	Zoysia japonica	7	nbis-gene-10891, nbis-gene-13104, nbis-gene-136 ... nbis-gene-23530, nbis-gene-28234, nbis-gene-58212, nbis-gene-6868
Poaceae	Zoysia macrostachya	6	Zma_g10020, Zma_g11877, Zma_g26511, Zma_g7046, Zma_g7667 ... Zma_g9332
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.813, evm.TU.LG05.447, evm.TU.LG08.672 ... evm.TU.LG12.921, evm.TU.LG22.1277
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g27630, gene.Posoc02g33070, gene.Posoc07g12670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.129, evm.TU.Scaffold_5_RagTag.885 ... evm.TU.Scaffold_9_RagTag.834
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11460, nbisL1-mrna-8137, nbisL1-mrna-8143
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1712, nbisL1-mrna-1881, nbisL1-mrna-5125
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11511, nbisL1-mrna-18465, nbisL1-mrna-5209
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.574, evm.TU.utg000006l.237 ... evm.TU.utg000012l.94
Rhizophoraceae	Kandelia obovata	3	Maker00009869, Maker00011254, Maker00013028
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10065, nbisL1-mrna-1551, nbisL1-mrna-7865
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-119, nbisL1-mrna-5217, nbisL1-mrna-7504
Salicaceae	Populus euphratica	6	populus_peu13375, populus_peu15707, populus_peu19121 ... populus_peu27230, populus_peu31211, populus_peu37176
Solanaceae	Lycium barbarum	4	gene-LOC132609568, gene-LOC132635574, gene-LOC132638431 ... gene-LOC132645935
Solanaceae	Solanum chilense	3	SOLCI001649000, SOLCI002271800, SOLCI003536000
Solanaceae	Solanum pennellii	3	gene-LOC107008157, gene-LOC107023781, gene-LOC107027240
Tamaricaceae	Reaumuria soongarica	3	STRG.10618_chr07_-, STRG.32329_chr09_-, STRG.8405_chr05_+
Tamaricaceae	Tamarix chinensis	3	TC01G3979, TC02G1357, TC08G0615
Zosteraceae	Zostera marina	2	Zosma01g11850.v3.1, Zosma06g22110.v3.1