halophFGD

Basic Information

Locus ID: Ag10G01811

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: 60s ribosomal protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	202729755	202732354	-	Ag10G01811

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
11.25	21,089.75 Da	40.02	83.42	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17135	Ribosomal protein 60S L18 and 50S L18e	2	187	4.2E-93	IPR021131
SUPERFAMILY	SSF52080	Ribosomal proteins L15p and L18e	21	139	5.89E-26	IPR036227
Gene3D	G3DSA:3.100.10.10	-	1	187	6.8E-99	-
MobiDBLite	mobidb-lite	consensus disorder prediction	152	187	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	164	187	-	-

KEGG Pathway

KO Term:

K02883 (large subunit ribosomal protein L18e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05590.1	ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18.
RefSeq	XP_017230998.1	PREDICTED: 60S ribosomal protein L18-2 [Daucus carota subsp. sativus]
Swiss-Prot	P42791	Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2
TrEMBL	A0A166CDL5	Ribosomal_L18e/L15P domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002849 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	162.86853	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	103.604889	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	89.564171	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	88.895683	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	90.882462	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	73.851364	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	69.577942	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	37.721031	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	162.33046	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	155.890915	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	150.787491	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	188.273514	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	176.25705	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	200.182678	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	152.004639	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	199.258102	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	208.527267	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	172.64032	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	158.949051	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	193.385864	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	164.578461	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	225.535645	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	236.989288	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	270.868744	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	252.985001	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	150.5327	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	181.354523	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	149.109467	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	210.967819	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	238.289291		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	262.112274		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	293.086395		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	132.104797		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	226.863571		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	128.532349		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	191.044708		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	165.088013		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	190.242828		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	167.767548	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	64.075439	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	58.762302	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	204.913681	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	345.033295	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	324.377747	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	240.690109	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	286.367249	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	205.313919	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	303.402405	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	264.333496	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	271.079041	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg35164, jg37930, jg8909
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10392, gene_6370
Amaranthaceae	Atriplex hortensis	3	Ah005715, Ah029415, Ah029416
Amaranthaceae	Beta vulgaris	2	BVRB_4g076000, BVRB_7g163580
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1285, Sbi_jg17178, Sbi_jg35284, Sbi_jg61787
Amaranthaceae	Salicornia europaea	2	Seu_jg3430, Seu_jg439
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015370, GOSA_00024397, GOSA_00026796
Amaranthaceae	Suaeda glauca	2	Sgl74090, Sgl77570
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007770, gene:ENSEOMG00000008760 ... gene:ENSEOMG00000031062, gene:ENSEOMG00000035938, gene:ENSEOMG00000040553, gene:ENSEOMG00000042559
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0007860, CQ.Regalona.r1.4BG0008000 ... CQ.Regalona.r1.7AG0012850, CQ.Regalona.r1.7AG0021760, CQ.Regalona.r1.7BG0014820
Anacardiaceae	Pistacia vera	2	pistato.v30008880, pistato.v30081600
Apiaceae	Apium graveolens	3	Ag10G01811, Ag2G02519, Ag9G02267
Arecaceae	Cocos nucifera	4	COCNU_01G001630, COCNU_12G002580, COCNU_16G003640 ... scaffold010452G000020
Arecaceae	Phoenix dactylifera	6	gene-LOC103696227, gene-LOC103703629, gene-LOC103721685 ... gene-LOC120105778, gene-LOC120106974, gene-LOC120107273
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.2148.V1.1, AsparagusV1_04.1389.V1.1 ... AsparagusV1_08.1454.V1.1, AsparagusV1_10.854.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G04124, Ftri12G10345, Ftri15G00353, Ftri3G14162
Brassicaceae	Arabidopsis thaliana	3	AT2G47570.1, AT3G05590.1, AT5G27850.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004865m.g.v1.0, Thhalv10021598m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g20970.v2.2, Sp3g04470.v2.2
Brassicaceae	Brassica nigra	6	BniB01g058010.2N, BniB02g078970.2N, BniB04g004730.2N ... BniB07g032840.2N, BniB07g038700.2N, BniB07g062550.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G0982, Ceq06G1153
Casuarinaceae	Casuarina glauca	2	Cgl06G1012, Cgl06G1203
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno15g06210, gene.Cymno15g06300, gene.Cymno17g01210 ... gene.Cymno18g01160
Dunaliellaceae	Dunaliella salina	1	Dusal.0152s00012.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03120, gene.Thate06g16680, gene.Thate07g09400
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.2491, evm.TU.LG04.373
Plantaginaceae	Plantago ovata	3	Pov_00023797, Pov_00024906, Pov_00036808
Plumbaginaceae	Limonium bicolor	4	Lb1G06502, Lb1G07594, Lb2G12654, Lb4G24504
Poaceae	Echinochloa crus-galli	9	AH01.3698, AH03.4043, AH05.1020, BH01.4049, BH03.4380 ... BH05.1070, CH01.4314, CH05.1220, CH07.136
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0247680, gene-QOZ80_3BG0280550 ... gene-QOZ80_5AG0404260, gene-QOZ80_7AG0581600, gene-QOZ80_7BG0612680
Poaceae	Lolium multiflorum	3	gene-QYE76_009996, gene-QYE76_010063, gene-QYE76_038797
Poaceae	Oryza coarctata	6	Oco05G013160, Oco06G013270, Oco09G002620, Oco10G002710 ... Oco13G015680, Oco14G016500
Poaceae	Oryza sativa	3	LOC_Os03g22180.1, LOC_Os05g06310.1, LOC_Os07g47780.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G359600, gene-BS78_02G388300 ... gene-BS78_09G056800
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102699, Pt_Chr0305525, Pt_Chr0305565, Pt_Chr0501925
Poaceae	Sporobolus alterniflorus	8	Chr01G012120, Chr04G011010, Chr12G024530, Chr18G000740 ... Chr19G000460, Chr22G014950, Chr24G012430, Chr27G017120
Poaceae	Thinopyrum elongatum	3	Tel1E01G203200, Tel2E01G236400, Tel4E01G254300
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG016800, gene_TRIDC1BG018140 ... gene_TRIDC2AG013110, gene_TRIDC2BG016120, gene_TRIDC4AG020120, gene_TRIDC4BG030350, gene_TRIDC7BG037350
Poaceae	Triticum aestivum	8	TraesCS1A02G096500.2, TraesCS1B02G127200.1 ... TraesCS1D02G105500.2, TraesCS2A02G109900.1, TraesCS2B02G127900.1, TraesCS2D02G110100.1, TraesCS4B02G166800.1, TraesCS4D02G169400.1
Poaceae	Zea mays	3	Zm00001eb282790_P004, Zm00001eb330480_P001 ... Zm00001eb346100_P001
Poaceae	Zoysia japonica	6	nbis-gene-110, nbis-gene-18156, nbis-gene-23448 ... nbis-gene-3321, nbis-gene-33230, nbis-gene-41661
Poaceae	Zoysia macrostachya	4	Zma_g26460, Zma_g27723, Zma_g5772, Zma_g7065
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.105, evm.TU.LG03.857, evm.TU.LG04.644 ... evm.TU.LG08.700, evm.TU.LG12.880, evm.TU.LG22.1310
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g07950, gene.Posoc04g17960, gene.Posoc07g11760
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.99, evm.TU.Scaffold_2_RagTag.2073 ... evm.TU.Scaffold_5_RagTag.842, evm.TU.Scaffold_9_RagTag.805
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11497, nbisL1-mrna-21423, nbisL1-mrna-2887
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12847, nbisL1-mrna-14198, nbisL1-mrna-19971
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11475, nbisL1-mrna-13670, nbisL1-mrna-18494
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.596, evm.TU.utg000006l.206 ... evm.TU.utg000009l.46
Rhizophoraceae	Kandelia obovata	3	Maker00005041, Maker00009832, Maker00013573
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10092, nbisL1-mrna-12993, nbisL1-mrna-1575 ... nbisL1-mrna-7888
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16140, nbisL1-mrna-5243, nbisL1-mrna-7469 ... nbisL1-mrna-90
Salicaceae	Populus euphratica	5	populus_peu13340, populus_peu15667, populus_peu27282 ... populus_peu31257, populus_peu31268
Solanaceae	Lycium barbarum	3	gene-LOC132603186, gene-LOC132610570, gene-LOC132645985
Solanaceae	Solanum chilense	2	SOLCI001828600, SOLCI006761100
Solanaceae	Solanum pennellii	2	gene-LOC107006365, gene-LOC107031740
Tamaricaceae	Reaumuria soongarica	3	STRG.32707_chr09_-, gene_4879, gene_7063
Tamaricaceae	Tamarix chinensis	2	TC01G0393, TC02G0844
Zosteraceae	Zostera marina	1	Zosma06g02920.v3.1