halophFGD

Basic Information

Locus ID: Ag10G01791

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the importin alpha family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	202088673	202095009	-	Ag10G01791

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.38	51,853.39 Da	33.22	108.82	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00514	Armadillo/beta-catenin-like repeat	104	144	3.0E-12	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	231	270	9.5E-8	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	314	353	2.5E-11	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	358	395	1.8E-6	IPR000225
Pfam	PF12937	F-box-like	7	49	2.2E-9	IPR001810
Pfam	PF00514	Armadillo/beta-catenin-like repeat	272	311	1.9E-5	IPR000225
Pfam	PF16186	Atypical Arm repeat	419	459	1.7E-10	IPR032413
Pfam	PF00514	Armadillo/beta-catenin-like repeat	62	102	1.2E-9	IPR000225
SUPERFAMILY	SSF81383	F-box domain	7	42	4.9E-7	IPR036047
SUPERFAMILY	SSF48371	ARM repeat	34	448	6.14E-102	IPR016024
Gene3D	G3DSA:1.25.10.10	-	32	449	3.8E-149	IPR011989
SMART	SM00185	arm_5	104	144	2.1E-10	IPR000225
SMART	SM00185	arm_5	314	354	3.4E-9	IPR000225
SMART	SM00256	fbox_2	8	48	3.4E-5	IPR001810
SMART	SM00185	arm_5	357	397	1.2E-4	IPR000225
SMART	SM00185	arm_5	189	228	1.0	IPR000225
SMART	SM00185	arm_5	61	102	2.7E-9	IPR000225
SMART	SM00185	arm_5	146	187	29.0	IPR000225
SMART	SM00185	arm_5	230	270	4.7E-4	IPR000225
SMART	SM00185	arm_5	272	312	7.2E-4	IPR000225
PIRSF	PIRSF005673	Importin_alpha	26	462	6.7E-166	IPR024931
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	72	115	9.712399	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	115	157	11.4974	IPR000225
ProSiteProfiles	PS50181	F-box domain profile.	2	49	10.875178	IPR001810

Gene Ontology

Biological Process:

GO:0006606 (protein import into nucleus)

Molecular Function:

GO:0005515 (protein binding) GO:0061608 (nuclear import signal receptor activity)

Cellular Component:

GO:0005737 (cytoplasm)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09270.3	importin alpha isoform 4. Protein interacts with Agrobacterium proteins VirD2 and VirE2.
RefSeq	XP_039043835.1	importin subunit alpha-like [Hibiscus syriacus]
Swiss-Prot	O22478	Importin subunit alpha OS=Solanum lycopersicum OX=4081 PE=2 SV=2
TrEMBL	A0A7J9FSK4	Importin subunit alpha OS=Gossypium trilobum OX=34281 GN=Gotri_027961 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.733728	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.682176	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.117522	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.972087	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.970071	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	5.106251	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.053339	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.952041	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.78151	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	8.344662	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.739672	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	9.433606	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.708227	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.332052	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.752062	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.122015	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.046135	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.017327	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.863388	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.651121	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.554126	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.242157	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	4.533732	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.646322	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	4.638098	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.458367	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.878011	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.401251	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.911658	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.380941		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.372578		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.969158		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.998987		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.170964		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.403901		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.109362		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.459722		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.642345		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.259243	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.813716	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.385398	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.703257	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.59125	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.610894	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	4.528834	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.102989	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.881819	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.426523	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.581936	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.689268	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	19	Ag10G01596, Ag10G01791, Ag10G02271, Ag10G02272, Ag10G02514 ... Ag10G02844, Ag11G03848, Ag11G04933, Ag1G00622, Ag3G00014, Ag3G00173, Ag3G00190, Ag3G00228, Ag3G00380, Ag4G01437, Ag4G02758, Ag5G00703, Ag6G00095, Ag9G00794
Plantaginaceae	Plantago ovata	1	Pov_00008960