Basic Information
Locus ID:
Ag10G01785
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Bromodomain and WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 202013145 | 202029716 | + | Ag10G01785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 180,430.84 Da | 46.58 | 74.70 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 232 | 614 | 7.24047E-53 | - |
| CDD | cd05529 | Bromo_WDR9_I_like | 1444 | 1598 | 6.44975E-33 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 309 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 355 | 4.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 575 | 614 | 0.065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 231 | 268 | 7.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 394 | 423 | 0.062 | IPR001680 |
| Pfam | PF00439 | Bromodomain | 1529 | 1585 | 3.7E-7 | IPR001487 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 227 | 657 | 7.94E-67 | IPR036322 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1529 | 1601 | 2.09E-11 | IPR036427 |
| Gene3D | G3DSA:2.130.10.10 | - | 536 | 670 | 5.7E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 388 | 2.1E-39 | IPR015943 |
| Gene3D | G3DSA:1.20.920.10 | - | 1510 | 1604 | 6.1E-9 | IPR036427 |
| Gene3D | G3DSA:2.130.10.10 | - | 389 | 526 | 7.8E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 268 | 3.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 500 | 0.76 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 355 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 423 | 8.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 614 | 5.8E-5 | IPR001680 |
| SMART | SM00297 | bromo_6 | 1494 | 1602 | 0.0022 | IPR001487 |
| SMART | SM00320 | WD40_4 | 532 | 571 | 3.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 278 | 311 | 10.363778 | - |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 1532 | 1583 | 9.3524 | IPR001487 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 320 | 360 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 391 | 423 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 278 | 319 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 236 | 277 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 236 | 272 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 320 | 364 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 581 | 623 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 391 | 423 | 11.310488 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 342 | 356 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 601 | 615 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 388 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47410.5 | - | 0 |
| RefSeq | XP_017241511.1 | PREDICTED: bromodomain and WD repeat-containing protein 1-like [Daucus carota subsp. sativus] | 0 |
| Q8WWQ0 | PH-interacting protein OS=Homo sapiens OX=9606 GN=PHIP PE=1 SV=2 | 0 | |
| TrEMBL | A0A166CCV4 | Bromodomain and WD repeat-containing protein 3-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012355 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.737333 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.199916 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.413437 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.981995 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.490134 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.238608 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.308615 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.628047 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.398735 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.162849 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.608551 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.79088 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.41147 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.080042 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.603761 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.834449 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.696066 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.065327 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.391904 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.351998 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.080384 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.764724 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.968719 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.091266 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.139846 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.342899 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.668156 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.086354 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.202768 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.437056 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.134015 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.89799 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.564233 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.529079 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.815391 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.181874 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.812132 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.314327 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.896294 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.057509 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.949691 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.222744 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.739335 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.076854 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.414445 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.89934 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.424719 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.660787 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.632645 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.335036 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28097, jg8963 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15914, gene_19270 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000116, Ah005387, Ah019107 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053860, BVRB_5g121730 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg31345, Sbi_jg38015, Sbi_jg57938, Sbi_jg6158 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15688, Seu_jg25570 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004459, GOSA_00006203 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl00853, Sgl00979, Sgl05807, Sgl05934, Sgl54504, Sgl59846 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000002379, gene:ENSEOMG00000006720 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0001370, CQ.Regalona.r1.5AG0026920 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30008210, pistato.v30233390 |
| Apiaceae | Apium graveolens | 2 | Ag10G01785, Ag9G01903 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G010880, COCNU_16G004500 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700969, gene-LOC103704651 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.509.V1.1, AsparagusV1_07.1239.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G27310, Ftri9G14619, Ftri9G25088, Ftri9G27926 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G47410.1, AT5G49430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001281m.g.v1.0, Thhalv10003509m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g19760.v2.2, Sp4g29360.v2.2, SpUn0021_0090.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g000380.2N, BniB02g070300.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1042, Ceq09G1057 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1083, Cgl09G1146 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18160, gene.Cymno03g02430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1122s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5467 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.442, evm.TU.LG11.1211 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024935, Pov_00026037 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03024, Lb3G21236, Lb4G25035 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3887, BH01.4223, CH01.4512 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0245380 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0382540.1, HORVU.MOREX.r3.5HG0421410.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047797, gene-QYE76_068476 |
| Poaceae | Oryza coarctata | 2 | Oco05G011500, Oco06G014900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g19340.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G379400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102553, Pt_Chr0102562 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032800, Chr04G009470, Chr07G002220, Chr12G006770 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G331000, Tel5E01G033100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG017220, gene_TRIDC5AG002290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3D02G059100.1, TraesCS4A02G120400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb336210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1852 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1377 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2938, evm.TU.LG16.1177, evm.TU.LG20.1375 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g07310 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.642, evm.TU.Scaffold_5_RagTag.793 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11542, nbisL1-mrna-1330, nbisL1-mrna-1331 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-13248, nbisL1-mrna-18438, nbisL1-mrna-5713 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1011, nbisL1-mrna-11432, nbisL1-mrna-6335 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000006l.566, evm.TU.utg000011l.753 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00007778, Maker00012656, Maker00013140 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10116, nbisL1-mrna-13549, nbisL1-mrna-5293 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13081, nbisL1-mrna-4075, nbisL1-mrna-7426 |
| Salicaceae | Populus euphratica | 3 | populus_peu06914, populus_peu20850, populus_peu27344 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626613, gene-LOC132644942 |
| Solanaceae | Solanum chilense | 2 | SOLCI002432100, SOLCI003714300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007765, gene-LOC107032559 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16456, gene_5290 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1402, TC07G2749 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25280.v3.1 |