halophFGD

Basic Information

Locus ID: Ag10G01773

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: PAPA-1-like conserved region

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	201730348	201735814	+	Ag10G01773

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.52	61,824.18 Da	49.84	53.09	-1.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04438	HIT zinc finger	518	549	8.9E-7	IPR007529
Pfam	PF04795	PAPA-1-like conserved region	417	501	2.6E-19	IPR006880
SMART	SM01406	PAPA_1_2	417	502	2.0E-31	IPR006880
MobiDBLite	mobidb-lite	consensus disorder prediction	190	206	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	322	338	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	350	377	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	58	81	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	477	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	408	474	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	82	101	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	160	183	-	-
Coils	Coil	Coil	409	443	-	-

Gene Ontology

Cellular Component:

GO:0031011 (Ino80 complex)

KEGG Pathway

KO Term:

K11666 (INO80 complex subunit B)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G47350.1	HIT zinc finger ;PAPA-1-like conserved region.
RefSeq	XP_017237531.1	PREDICTED: RNA polymerase-associated protein LEO1-like [Daucus carota subsp. sativus]
TrEMBL	A0A166CCE6	PAPA-1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012336 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.500225	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	8.569708	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.54624	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	9.398404	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.268617	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.266063	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.059794	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	6.501452	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	12.224967	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.813599	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	13.591206	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	14.047927	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.630046	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.06773	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.937919	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.127845	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.413256	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.110262	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.023634	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.043169	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.463198	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	4.981997	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	4.687924	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.805828	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.086182	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	7.922658	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	5.428725	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	6.279217	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.750834	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.791741		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.387741		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.789783		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.954433		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.074257		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.673181		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.849703		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.650433		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.449821		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.704347	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.528588	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.997748	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.369185	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.514075	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.391218	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	6.151544	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.761665	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	6.408431	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.618229	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.221276	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.865207	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg28267, jg35110, jg8974
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15910, gene_19262
Amaranthaceae	Atriplex hortensis	2	Ah000102, Ah019086
Amaranthaceae	Beta vulgaris	2	BVRB_3g053990, BVRB_5g121890
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg29431, Sbi_jg3677, Sbi_jg38024, Sbi_jg38026 ... Sbi_jg6167, Sbi_jg6170
Amaranthaceae	Salicornia europaea	3	Seu_jg15677, Seu_jg15679, Seu_jg6301
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004477, GOSA_00006211, GOSA_00006214
Amaranthaceae	Suaeda glauca	5	Sgl00719, Sgl00838, Sgl05741, Sgl54533, Sgl59874
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003692, gene:ENSEOMG00000007448 ... gene:ENSEOMG00000021040, gene:ENSEOMG00000022260, gene:ENSEOMG00000029154, gene:ENSEOMG00000043949
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0027040, CQ.Regalona.r1.5BG0028660
Anacardiaceae	Pistacia vera	4	pistato.v30008050, pistato.v30080400, pistato.v30081140 ... pistato.v30233220
Apiaceae	Apium graveolens	3	Ag10G01773, Ag2G02487, Ag9G02330
Arecaceae	Cocos nucifera	3	COCNU_01G001180, COCNU_12G002990, scaffold056537G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103700982, gene-LOC103712647, gene-LOC103720648 ... gene-LOC103723395, gene-LOC120110162
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1964.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G30766, Ftri3G24222
Brassicaceae	Arabidopsis thaliana	3	AT1G56460.2, AT2G47350.1, AT3G06660.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001400m.g.v1.0, Thhalv10020778m.g.v1.0 ... Thhalv10023443m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g06300.v2.2, Sp3g05650.v2.2, Sp4g29290.v2.2
Brassicaceae	Brassica nigra	5	BniB01g000430.2N, BniB07g045040.2N, BniB07g059470.2N ... BniB08g030660.2N, BniS00512g350.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1053, Ceq06G1108
Casuarinaceae	Casuarina glauca	2	Cgl06G1095, Cgl06G1152
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g15080
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g09800, gene.Thate06g04850
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8267
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2555, evm.TU.LG04.461, evm.TU.LG11.1203
Plantaginaceae	Plantago ovata	2	Pov_00007171, Pov_00016473
Plumbaginaceae	Limonium bicolor	4	Lb2G10127, Lb2G10129, Lb3G20509, Lb5G27363
Poaceae	Echinochloa crus-galli	6	AH01.329, AH05.3739, BH01.393, BH05.3788, CH01.245 ... CH05.3987
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3AG0211060, gene-QOZ80_3BG0256290 ... gene-QOZ80_5BG0442250
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0443500.1, HORVU.MOREX.r3.5HG0524280.1
Poaceae	Lolium multiflorum	2	gene-QYE76_001832, gene-QYE76_060903
Poaceae	Oryza coarctata	4	Oco05G026950, Oco06G027920, Oco23G008380, Oco24G007990
Poaceae	Oryza sativa	2	LOC_Os03g59680.1, LOC_Os12g37430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G037200, gene-BS78_08G104800
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0105705, Pt_Chr0703852, Pt_Chr0703863
Poaceae	Sporobolus alterniflorus	5	Chr01G001950, Chr04G031180, Chr12G033690, Chr19G009300 ... Chr27G007160
Poaceae	Thinopyrum elongatum	2	Tel5E01G174000, Tel5E01G738700
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG066800, gene_TRIDC5BG071830
Poaceae	Triticum aestivum	6	TraesCS5A02G088100.1, TraesCS5A02G466600.1 ... TraesCS5B02G094100.1, TraesCS5B02G478400.1, TraesCS5D02G100500.1, TraesCS5D02G479500.1
Poaceae	Zea mays	4	Zm00001eb015100_P001, Zm00001eb062140_P001 ... Zm00001eb136960_P002, Zm00001eb212230_P001
Poaceae	Zoysia japonica	3	nbis-gene-15449, nbis-gene-16560, nbis-gene-50038
Poaceae	Zoysia macrostachya	3	Zma_g206, Zma_g2513, Zma_g25186
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.1255, evm.TU.LG09.715
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g31350
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_17_RagTag.676, evm.TU.Scaffold_6_RagTag.1182 ... evm.TU.Scaffold_6_RagTag.1183, evm.TU.Scaffold_9_RagTag.741
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-16163, nbisL1-mrna-21479, nbisL1-mrna-23359
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13254, nbisL1-mrna-14181, nbisL1-mrna-20021
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1017, nbisL1-mrna-18549, nbisL1-mrna-20001
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.632, evm.TU.utg000011l.755 ... evm.TU.utg000013l.364
Rhizophoraceae	Kandelia obovata	3	Maker00004367, Maker00008386, Maker00009750
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10745, nbisL1-mrna-13547, nbisL1-mrna-1615
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14373, nbisL1-mrna-4070, nbisL1-mrna-5299
Salicaceae	Populus euphratica	6	populus_peu06904, populus_peu13287, populus_peu15609 ... populus_peu20840, populus_peu27356, populus_peu31340
Solanaceae	Lycium barbarum	3	gene-LOC132598446, gene-LOC132605555, gene-LOC132644927
Solanaceae	Solanum chilense	3	SOLCI000869100, SOLCI004901300, SOLCI007179100
Solanaceae	Solanum pennellii	3	gene-LOC107002875, gene-LOC107008116, gene-LOC107021915
Tamaricaceae	Reaumuria soongarica	2	STRG.18394_chr09_-, gene_16390
Tamaricaceae	Tamarix chinensis	3	TC06G1340, TC07G1734, TC07G2830
Zosteraceae	Zostera marina	3	Zosma01g27580.v3.1, Zosma02g03320.v3.1, Zosma02g23890.v3.1