Basic Information
Locus ID:
Ag10G01772
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 201642280 | 201649419 | + | Ag10G01772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 77,958.46 Da | 43.75 | 90.52 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 376 | 646 | 3.79355E-92 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 373 | 645 | 2.8E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 345 | 647 | 7.28E-82 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 448 | 671 | 9.1E-64 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 348 | 447 | 2.1E-31 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 370 | 648 | 38.195026 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | 5.0 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 376 | 398 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 494 | 506 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 286 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02010.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017242598.1 | PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8RWW0 | Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana OX=3702 GN=ALE2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166CCD4 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012335 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.097906 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.638309 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.603558 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.596968 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.173031 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.684313 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.365114 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.879522 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 41.591064 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 40.951214 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 45.278996 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 39.505249 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.42078 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 38.483372 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 61.208672 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 58.074699 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 57.098549 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 42.32922 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 33.240765 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 38.859722 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 39.3111 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 59.785042 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 62.601406 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 53.145794 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 50.518612 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 50.614124 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 44.926483 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 36.21703 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 51.460293 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.743549 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.317562 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.250189 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 30.113806 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 25.723841 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.845827 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.394087 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.971094 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 22.238291 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.509745 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.567867 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.485166 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.022654 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 31.084089 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 57.045856 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 44.140053 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.465841 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 50.606625 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.652161 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.406933 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 29.707733 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12834, jg27667 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19259 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000101 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009000, BVRB_5g121910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31318, Sbi_jg57963 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25592 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004479, GOSA_00004480 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54535, Sgl59876 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006642, gene:ENSEOMG00000022785 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027050, CQ.Regalona.r1.5BG0028680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30008040 |
| Apiaceae | Apium graveolens | 1 | Ag10G01772 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G011160, COCNU_16G004550 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700983, gene-LOC103720662 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1253.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G32776 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028470m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g01890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g040400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1096 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g18130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g09690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6223, nbisL1-mrna-6224 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.462 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000614, Pov_00025482 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10131 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1003, BH02.1123, CH02.1175 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0005450, gene-QOZ80_1BG0054080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0252820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052095 |
| Poaceae | Oryza coarctata | 2 | Oco01G006770, Oco02G007070 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g14932.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G103400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604161 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G002160, Chr08G002910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G301700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG023800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G171600.1, TraesCS3B02G202600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb127580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32414 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7419 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1256, evm.TU.LG09.714 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g07170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.740 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18968 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18550, nbisL1-mrna-18551 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.633 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009329 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1616 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5300 |
| Salicaceae | Populus euphratica | 2 | populus_peu27362, populus_peu31344 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644926 |
| Solanaceae | Solanum chilense | 1 | SOLCI000869000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007851 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16391 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2828 |
| Zosteraceae | Zostera marina | 2 | Zosma06g21730.v3.1, Zosma06g21740.v3.1 |