HalophFGD

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Basic Information
Locus ID: Ag10G01756
Species & Taxonomic ID: Apium graveolens & 4045
Genome Assembly: GCA_009905375.1
Description: Glycogen synthase kinase-3 homolog
Maps and Mapping Data
Chromosome Start End Strand ID
chr10 200226408 200229123 + Ag10G01756
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.11 27,044.06 Da 42.94 87.29 -0.26
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00069 Protein kinase domain 57 102 5.9E-15 IPR000719
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 56 214 2.0E-33 IPR011009
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 53 103 3.7E-16 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 104 232 1.5E-29 -
SMART SM00220 serkin_6 10 188 2.8E-7 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 1 188 14.054156 IPR000719
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 72 84 - IPR008271
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K03083 (glycogen synthase kinase 3 beta [EC:2.7.11.26])
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance) map01521 (EGFR tyrosine kinase inhibitor resistance) ko04012 (ErbB signaling pathway) map04012 (ErbB signaling pathway) ko04062 (Chemokine signaling pathway) map04062 (Chemokine signaling pathway) ko04110 (Cell cycle) map04110 (Cell cycle) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04550 (Signaling pathways regulating pluripotency of stem cells) map04550 (Signaling pathways regulating pluripotency of stem cells) map04657 (IL-17 signaling pathway) map04660 (T cell receptor signaling pathway) map04662 (B cell receptor signaling pathway) ko04711 (Circadian rhythm - fly) map04711 (Circadian rhythm - fly) ko04916 (Melanogenesis) map04916 (Melanogenesis)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G05840.1 Protein kinase superfamily protein. encodes a SHAGGY-like kinase involved in meristem organization. 0
RefSeq XP_017242304.1 PREDICTED: shaggy-related protein kinase alpha [Daucus carota subsp. sativus] 0
Swiss-Prot Q40518 Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum OX=4097 GN=NTK-1 PE=2 SV=1 0
TrEMBL A0A162ANB2 non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012319 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
PRJNA723697SRX10692252132.225342Shengqin NO.2seedS1-1S1-1initial formation stage (S1)
PRJNA723697SRX10692254170.680328Shengqin NO.2seedS1-3S1-3initial formation stage (S1)
PRJNA723697SRX10692255131.348099Shengqin NO.2seedS3-1S3-1middle development stage (S3)
PRJNA723697SRX10692256159.385284Shengqin NO.2seedS3-2S3-2middle development stage (S3)
PRJNA723697SRX10692257150.688782Shengqin NO.2seedS3-3S3-3middle development stage (S3)
PRJNA723697SRX10692258125.726997Shengqin NO.2seedS5-1S5-1maturation stage (S5)
PRJNA723697SRX10692259108.304703Shengqin NO.2seedS5-2S5-2maturation stage (S5)
PRJNA723697SRX1069226089.753441Shengqin NO.2seedS5-3S5-3maturation stage (S5)
PRJNA884666SRX17729272370.751892celeryantherW99A-r1male sterile line 
PRJNA884666SRX17729273366.36142celeryantherW99A-r2male sterile line 
PRJNA884666SRX17729274390.786926celeryantherW99A-r3male sterile line 
PRJNA884666SRX17729275353.840149celeryantherW99B-r1maintainer line
PRJNA884666SRX17729276330.318481celeryantherW99B-r2maintainer line
PRJNA884666SRX17729277287.022064celeryantherW99B-r3maintainer line
PRJNA884180SRX17743889277.45694var. secalinum YablochnycollenchymaCol_S1_rep1-1
PRJNA884180SRX17748056287.349731var. secalinum YablochnycollenchymaCol_S1_rep3biological replicate 3
PRJNA884180SRX17748057316.486969var. secalinum YablochnycollenchymaCol_S1_rep4biological replicate 4
PRJNA884180SRX17748678263.75708var. secalinum YablochnyparenchymaPar_S1_rep1Biological replicate 1
PRJNA884180SRX17748679265.9711var. secalinum YablochnyparenchymaPar_S1_rep2Biological replicate 2
PRJNA884180SRX17748680244.276978var. secalinum YablochnyparenchymaPar_S1_rep3Biological replicate 3
PRJNA884180SRX17748681281.130768var. secalinum YablochnyparenchymaPar_S1_rep4Biological replicate 4
PRJNA884180SRX17748898310.624115var. secalinum Yablochnyvascular bundleVas_S1_rep1Biological replicate 1
PRJNA884180SRX17748899314.733276var. secalinum Yablochnyvascular bundleVas_S1_rep2Biological replicate 2
PRJNA884180SRX17748900277.265503var. secalinum Yablochnyvascular bundleVas_S1_rep3Biological replicate 3
PRJNA884180SRX17748901294.899139var. secalinum Yablochnyvascular bundleVas_S1_rep4Biological replicate 4
PRJNA884180SRX17749129277.50592var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep1Biological replicate 1
PRJNA884180SRX17749130278.933075var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep2Biological replicate 2
PRJNA884180SRX17749131237.308899var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep3Biological replicate 3
PRJNA884180SRX17749132264.606628var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep4Biological replicate 4
PRJNA1124269SRX24936411187.279114leafCK1replicate=biological replicate1
PRJNA1124269SRX24936412201.33902leafCK2replicate=biological replicate2
PRJNA1124269SRX24936413189.266693leafCK3replicate=biological replicate3
PRJNA1124269SRX24936414302.577362leafD1replicate=biological replicate1
PRJNA1124269SRX24936415284.354462leafD2replicate=biological replicate2
PRJNA1124269SRX24936416315.643494leafD3replicate=biological replicate3
PRJNA1124269SRX24936417271.358124leafMD1replicate=biological replicate1
PRJNA1124269SRX24936418157.718521leafMD2replicate=biological replicate2
PRJNA1124269SRX24936419199.12323leafMD3replicate=biological replicate3
PRJNA387092SRX2833309160.591965shanghaihuangxinleafleaves between 0.5 and 1 cm in breadth, folded;stage 2
PRJNA387092SRX2833321159.771744shanghaihuangxinleafleaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sionstage 5
PRJNA387092SRX283332397.343964shanghaihuangxinleafleaves >3 cm, unfolded, with clearstem extensionstage 7
PRJNA543957SRX5879598326.678192Zhangzhou lvqingstemSe3100 ppm Na2SeO4
PRJNA543957SRX5879599327.156555Zhangzhou lvqingstemSe2100 ppm Na2SeO4
PRJNA543957SRX5879600358.798462Zhangzhou lvqingstemMock2mock
PRJNA543957SRX5879601376.657043Zhangzhou lvqingstemMock1mock
PRJNA543957SRX5879602321.076447Zhangzhou lvqingstemSe1100 ppm Na2SeO4
PRJNA543957SRX5879603386.72998Zhangzhou lvqingstemMock3mock
PRJNA609149SRX7815917170.278961Jinnan Shiqinflower budearly flower budearly flower bud
PRJNA609149SRX7815918129.900757Jinnan Shiqinflower budmiddle flower budmiddle flower bud
PRJNA609149SRX7815919127.288986Jinnan Shiqinflower budearly flowering periodearly flowering period
Network
🔍 Co-expression Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Beta vulgaris 1 BVRB_7g162470
Apiaceae Apium graveolens 2 Ag10G01756, Ag2G01776
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.