Basic Information
Locus ID:
Ag10G01724
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Structural maintenance of chromosomes protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 198405030 | 198416350 | + | Ag10G01724 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 77,689.19 Da | 45.30 | 84.57 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13990 | STKc_TLK | 400 | 673 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 402 | 673 | 2.5E-58 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 675 | 7.69E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 392 | 679 | 5.8E-70 | - |
| SMART | SM00220 | serkin_6 | 401 | 674 | 9.7E-71 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 401 | 674 | 43.452877 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 527 | 539 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 407 | 430 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 145 | - | - |
| Coils | Coil | Coil | 187 | 238 | - | - |
| Coils | Coil | Coil | 295 | 322 | - | - |
| Coils | Coil | Coil | 352 | 386 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20930.1 | Protein kinase superfamily protein. Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13. | 0 |
| RefSeq | XP_017237296.1 | PREDICTED: serine/threonine-protein kinase TOUSLED [Daucus carota subsp. sativus] | 0 |
| Q39238 | Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana OX=3702 GN=TOUSLED PE=1 SV=1 | 0 | |
| TrEMBL | A0A161WXQ1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.865963 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.912994 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.306431 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.522896 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.750245 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.369998 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.585328 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.345559 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.697636 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.669592 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.254118 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.785791 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.414948 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.169373 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.037005 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.479316 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.591105 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.29203 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.659638 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.601434 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.699281 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.770365 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.222269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.946905 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.895597 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.311255 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.815639 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.801698 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.845211 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.165845 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.591096 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.058514 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.60394 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.731322 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.445116 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.386581 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.791071 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.260058 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.837843 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.206506 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.467474 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.975849 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.268403 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.325813 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.419565 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.763344 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.82623 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.47584 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.326729 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.168819 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36063, jg8090 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6874 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027765 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171520 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1479, Sbi_jg35071 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3264 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003433 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72690, Sgl76229 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004778, gene:ENSEOMG00000037810 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0000710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30055640 |
| Apiaceae | Apium graveolens | 1 | Ag10G01724 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707239 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3395.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G10481 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G20930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012855m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23590.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g041980.2N, BniB05g042640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1507 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g14000, gene.Cymno15g03560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0296s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.514 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015729, Pov_00026563 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20252 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.720, CH01.717, Contig309.77 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216050, gene-QOZ80_3BG0261310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0510760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_061822, gene-QYE76_061829 |
| Poaceae | Oryza coarctata | 2 | Oco05G023660, Oco06G024580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G080500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107169, Pt_Chr0107179 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005170, Chr04G028610, Chr07G027570, Chr12G037620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G619000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056770, gene_TRIDC5BG060940 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G389200.1, TraesCS5B02G394400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb057260_P002, Zm00001eb214860_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16160 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2793 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1872, evm.TU.LG14.14 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00650 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30502 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11234 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15954 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.304 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015541 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4222 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15224 |
| Salicaceae | Populus euphratica | 3 | populus_peu08523, populus_peu08524, populus_peu36825 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600682 |
| Solanaceae | Solanum chilense | 1 | SOLCI003293600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002889 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3652 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1255 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30440.v3.1 |