Basic Information
Locus ID:
Ag10G01679
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 196278105 | 196282480 | - | Ag10G01679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 104,039.05 Da | 33.13 | 92.26 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 612 | 885 | 5.57804E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 609 | 880 | 1.0E-44 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 332 | 367 | 0.014 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 3.1E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 23 | 306 | 1.81E-39 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 330 | 479 | 4.76E-16 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 583 | 882 | 1.07E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 684 | 904 | 9.7E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 570 | 683 | 4.2E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 329 | 455 | 1.1E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 325 | 6.7E-63 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 393 | 416 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 114 | 137 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 263 | 287 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 113 | 170.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 606 | 882 | 1.2E-35 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 190 | 213 | 42.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 606 | 886 | 38.534245 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 612 | 634 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 731 | 743 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 495 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_017254187.1 | PREDICTED: receptor protein kinase TMK1-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6YZT2 | Protein kinase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_006726 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.502763 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.900593 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.91106 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.637592 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.076236 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.35429 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.107215 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.256671 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.240433 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.331757 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.194679 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.806696 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.381578 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.649192 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.500396 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.068171 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.127805 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.262802 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.61721 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.170875 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.522642 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.188377 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.019204 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.123109 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.060101 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.363467 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.137813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.322672 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.226314 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.203717 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.11283 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.444498 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.744928 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.558963 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.751359 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.718661 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.8688 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.098868 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.914963 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.239669 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.223805 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.286341 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.227737 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.472949 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.649327 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.998131 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg15149, jg16419, jg32726, jg36042, jg3660, jg37631 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2303, gene_5719 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003155, Ah027727 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g098480, BVRB_5g098490, BVRB_7g171050 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1483, Sbi_jg15694, Sbi_jg35067, Sbi_jg56494 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13726, Seu_jg3260 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001790, GOSA_00003427 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51474, Sgl56762, Sgl72686, Sgl76225 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005613, gene:ENSEOMG00000021607 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0010940, CQ.Regalona.r1.5BG0011450 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055780, pistato.v30276610 |
| Apiaceae | Apium graveolens | 3 | Ag10G01679, Ag10G02087, Ag2G01819 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017700, COCNU_11G003470 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721007, gene-LOC120105881 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.740.V1.1, AsparagusV1_09.128.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G32663 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0781, Ceq05G1865 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0892, Cgl05G1859 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g00430, gene.Cymno05g00260 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g18620, gene.Thate03g00710, gene.Thate09g01890 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8529 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1919 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003693, Pov_00026592 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26380 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2775, BH09.3012, CH09.3178 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0298700, gene-QOZ80_4BG0329400 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0213660.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047608, gene-QYE76_047689 |
| Poaceae | Oryza coarctata | 2 | Oco07G019790, Oco08G019070 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G291200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307083 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G000470, Chr25G000350, Chr26G018750 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G978400, Tel2E01G978600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG078960, gene_TRIDC2BG087240 |
| Poaceae | Triticum aestivum | 3 | TraesCS2B02G602000.1, TraesCS2D02G595000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb091830_P001, Zm00001eb434220_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23245, nbis-gene-6248 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20727, Zma_g22273 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2788, evm.TU.LG07.729, evm.TU.LG15.208 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g01030, gene.Posoc05g21360 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.505, evm.TU.Scaffold_13_RagTag.537 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-30548, nbisL1-mrna-4136, nbisL1-mrna-6260 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-12692, nbisL1-mrna-17031, nbisL1-mrna-4729 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10155, nbisL1-mrna-15928, nbisL1-mrna-19763 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.613, evm.TU.utg000015l.284 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00005975, Maker00015387, Maker00017282, Maker00018017 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12522, nbisL1-mrna-4201, nbisL1-mrna-7573 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13513, nbisL1-mrna-15255, nbisL1-mrna-5696 |
| Salicaceae | Populus euphratica | 5 | populus_peu02459, populus_peu12415, populus_peu25942 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599373, gene-LOC132607224, gene-LOC132625917 |
| Solanaceae | Solanum chilense | 3 | SOLCI002681900, SOLCI003871800, SOLCI004708800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002659, gene-LOC107007879, gene-LOC107023779 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.26352_chr11_+, gene_13224 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1648, TC05G2740 |
| Zosteraceae | Zostera marina | 3 | Zosma01g33630.v3.1, Zosma02g20590.v3.1, Zosma04g23670.v3.1 |