Basic Information
Locus ID:
Ag10G01657
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 195141277 | 195142698 | + | Ag10G01657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 39,060.28 Da | 41.13 | 83.74 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 67 | 8.07E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 83 | 5.7E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44326.1 | F-box family protein. | 0 |
| RefSeq | XP_017237150.1 | PREDICTED: probable F-box protein At1g60180 [Daucus carota subsp. sativus] | 0 |
| Q2V3R1 | F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166C9A9 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012224 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.614613 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.313499 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.905172 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.276522 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.12935 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.535087 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.551561 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.560659 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.290192 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.144314 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.527815 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.627218 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.180422 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.827362 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.227773 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.60397 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.103891 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 43.052193 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 38.582462 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 54.73613 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 63.684711 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 56.276314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 46.791832 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.874561 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 48.068329 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.134358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.024695 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.26649 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.712981 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.316823 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.07441 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.646981 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.016319 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.064704 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 28.969193 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.619125 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.448913 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.052079 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.780094 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.270191 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.00086 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 136.408829 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 161.894424 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 150.227493 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 117.599121 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 127.9991 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 147.489273 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 137.527283 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.565809 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.772306 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg15114, jg16436, jg31939, jg3632, jg37619 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14509, gene_6837 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031258 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g158710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2348, Sbi_jg34163 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2424 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006037 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl70888, Sgl74475 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008593, gene:ENSEOMG00000037010 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0021340, CQ.Regalona.r1.7BG0023570 |
| Apiaceae | Apium graveolens | 13 | Ag10G01656, Ag10G01657, Ag10G01659, Ag10G01660, Ag10G01661 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703233, gene-LOC103714304 |
| Asteraceae | Flaveria trinervia | 8 | Ftri12G29650, Ftri12G32528, Ftri18G04394, Ftri18G12149 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G27310.1, AT2G36090.1, AT3G44326.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002035m.g.v1.0, Thhalv10016952m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g10120.v2.2, Sp4g18320.v2.2, Sp5g16910.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g008290.2N, BniB01g016460.2N, BniB06g008060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0713, Ceq05G1841 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0810, Cgl05G1834 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g18260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6005 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1984, evm.TU.LG09.619 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00008561, Pov_00015770, Pov_00026611 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06012 |
| Poaceae | Echinochloa crus-galli | 13 | AH04.346, AH05.238, AH07.2069, AH09.934, BH01.2528, BH04.323 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0132990, gene-QOZ80_2BG0188380 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.2HG0166680.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_002895, gene-QYE76_022752, gene-QYE76_043976 ... |
| Poaceae | Oryza coarctata | 7 | Oco01G015610, Oco04G012160, Oco07G005640, Oco08G005360 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g49154.1, LOC_Os02g33240.1, LOC_Os04g33820.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G153300, gene-BS78_06G086700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0103853, Pt_Chr0604289, Pt_Chr0604324, Pt_Chr0703248 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr01G017310, Chr06G010480, Chr09G015060, Chr13G011020 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel2E01G525000, Tel3E01G616100, Tel4E01G187000 ... |
| Poaceae | Triticum dicoccoides | 12 | gene_TRIDC2AG042900, gene_TRIDC2BG045970 ... |
| Poaceae | Triticum aestivum | 16 | TraesCS2A02G296200.1.cds1, TraesCS2D02G294100.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb083710_P001, Zm00001eb197220_P001 ... |
| Poaceae | Zoysia japonica | 8 | nbis-gene-18877, nbis-gene-18878, nbis-gene-20810 ... |
| Poaceae | Zoysia macrostachya | 7 | Zma_g13633, Zma_g16423, Zma_g17583, Zma_g18427, Zma_g19648 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g00760, gene.Posoc05g16210, gene.Posoc05g21710 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_12_RagTag.523, evm.TU.Scaffold_13_RagTag.517 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24215, nbisL1-mrna-4176, nbisL1-mrna-6217 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11497, nbisL1-mrna-14161, nbisL1-mrna-19512 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10123, nbisL1-mrna-15909, nbisL1-mrna-19904 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000009l.373, add.evm.TU.utg000015l.108 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015838 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-18398, nbisL1-mrna-19025, nbisL1-mrna-19804 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-12001, nbisL1-mrna-13556, nbisL1-mrna-15271 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu08478, populus_peu12468, populus_peu36869 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600616, gene-LOC132605439 |
| Solanaceae | Solanum chilense | 2 | SOLCI005333400, SOLCI007463200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001716, gene-LOC107004080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7501 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1717, TC07G0750 |
| Zosteraceae | Zostera marina | 2 | Zosma05g06680.v3.1, Zosma05g06690.v3.1 |