Basic Information
Locus ID:
Ag10G01626
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 193712614 | 193724650 | - | Ag10G01626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 116,124.82 Da | 40.14 | 79.10 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 365 | 6.16559E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 159 | 194 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 92 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 119 | 153 | 3.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 16 | 41 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 335 | 365 | 0.027 | IPR001680 |
| Pfam | PF07569 | TUP1-like enhancer of split | 692 | 891 | 4.2E-49 | IPR011494 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 15 | 365 | 6.41E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 239 | 6.6E-46 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 240 | 388 | 4.6E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2 | 41 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 366 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 114 | 153 | 1.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 323 | 0.51 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 689 | 390.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 121 | 157 | 13.448307 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 9 | 41 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 194 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 92 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 121 | 162 | 16.6574 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 140 | 154 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1053 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1064 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44530.2 | homolog of histone chaperone HIRA. Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2. | 0 |
| RefSeq | XP_017242667.1 | PREDICTED: protein HIRA isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LXN4 | Protein HIRA OS=Arabidopsis thaliana OX=3702 GN=HIRA PE=1 SV=2 | 0 | |
| TrEMBL | A0A166C8E5 | Protein HIRA OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012182 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.110273 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.673233 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.257461 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.075569 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.43611 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.737417 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.846127 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.083378 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.731876 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.82045 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.023169 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.485056 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.058018 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.273519 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.078745 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.261018 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.016396 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.807031 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.673034 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.872482 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.936248 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.829853 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.984567 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.294088 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.040611 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.880224 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.743044 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.153416 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.761088 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.987871 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.271033 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.323274 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.331642 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.567819 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.90212 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.411011 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.433439 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.650936 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.306376 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.065897 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.082586 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.447584 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.968598 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.160662 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.078887 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.175213 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.35608 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.780843 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.531151 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.928749 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35990 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5683 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028945 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26966, Sbi_jg33583 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8293 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002956 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73291, Sgl76811 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005535, gene:ENSEOMG00000037467 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0000710, CQ.Regalona.r1.9BG0005040 |
| Apiaceae | Apium graveolens | 1 | Ag10G01626 |
| Arecaceae | Cocos nucifera | 1 | scaffold002569G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715391, gene-LOC103720567 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G08815 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G44530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010089m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g16690.v2.2, Sp5g16710.v2.2, Sp5g16720.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g025050.2N, BniB08g057540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1787 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1778 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g00130 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0011s00004.v1.0, Dusal.0157s00001.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g02460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2361, nbisL1-mrna-467 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.708 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015824 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G19609, Lb3G21286, Lb3G21290, Lb3G21291 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.360, AH03.1101, BH02.385, BH03.1260, CH02.424, CH02.428 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0525380, gene-QOZ80_6BG0479030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0332230.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006918 |
| Poaceae | Oryza coarctata | 2 | Oco17G012100, Oco18G012080 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G131500, gene-BS78_03G035000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700488, Pt_Chr0700549 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G005640, Chr11G013650, Chr14G008450, Chr21G008630 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G695600, Tel4E01G024500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG026660, gene_TRIDC4AG046540 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G304500.1, TraesCS4B02G006700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb121570_P001, Zm00001eb307860_P005 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-31837, nbis-gene-45758, nbis-gene-53388 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29855, Zma_g32044 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1809, evm.TU.LG14.72 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g00220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.563 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24174 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14403 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19863 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.224 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5760 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12039 |
| Salicaceae | Populus euphratica | 2 | populus_peu08597, populus_peu36737 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600574 |
| Solanaceae | Solanum chilense | 1 | SOLCI000751500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004876 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13478 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4388 |
| Zosteraceae | Zostera marina | 1 | Zosma03g17260.v3.1 |