halophFGD

Basic Information

Locus ID: Ag10G01602

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	192859117	192862646	-	Ag10G01602

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.90	54,850.05 Da	36.59	78.49	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	71	308	2.6E-25	IPR001245
SUPERFAMILY	SSF48452	TPR-like	386	485	1.0E-12	IPR011990
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	34	316	2.45E-43	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	27	132	1.3E-30	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	134	326	5.2E-43	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	382	489	3.0E-13	IPR011990
ProSiteProfiles	PS50011	Protein kinase domain profile.	57	311	19.439209	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K14500 (BR-signaling kinase [EC:2.7.11.1])

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain.
RefSeq	XP_017238218.1	PREDICTED: probable serine/threonine-protein kinase At5g41260 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FIL1	Serine/threonine-protein kinase BSK5 OS=Arabidopsis thaliana OX=3702 GN=BSK5 PE=1 SV=1
TrEMBL	A0A166C7M3	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012152 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.098271	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.094609	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.109071	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.141269	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	26.107021	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	23.269871	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.743275	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.206999	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	18.515835	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	17.70405	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.376491	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.405135	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.637124	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.873064	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.225424	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.23874	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.597703	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	41.99493	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	59.119057	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	50.232143	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	46.822609	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	15.456027	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	17.758116	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.931313	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.593997	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.245775		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.192759		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.322157		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.050761		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.183898	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.371939	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.103555	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.268155	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.071403	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.998693	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.149559	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	11.648122	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	43.722404	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	51.306942	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	45.623817	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg23459, jg32524, jg3309, jg37116
Aizoaceae	Mesembryanthemum crystallinum	4	gene_1709, gene_1838, gene_2442, gene_5831
Amaranthaceae	Atriplex hortensis	3	Ah004641, Ah023037, Ah027934
Amaranthaceae	Beta vulgaris	2	BVRB_1g004840, BVRB_7g172980
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1664, Sbi_jg23844, Sbi_jg34884, Sbi_jg4477, Sbi_jg7674 ... Sbi_jg49383
Amaranthaceae	Salicornia europaea	3	Seu_jg12346, Seu_jg3081, Seu_jg5899
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000422, GOSA_00001210, GOSA_00003292
Amaranthaceae	Suaeda glauca	6	Sgl11108, Sgl16511, Sgl51981, Sgl57284, Sgl72879, Sgl76414
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006766, gene:ENSEOMG00000007660 ... gene:ENSEOMG00000015752, gene:ENSEOMG00000021092, gene:ENSEOMG00000022343, gene:ENSEOMG00000036508, gene:ENSEOMG00000037224, gene:ENSEOMG00000040026, gene:ENSEOMG00000046412
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.1AG0002710, CQ.Regalona.r1.1AG0020830 ... CQ.Regalona.r1.2BG0024670, CQ.Regalona.r1.5AG0007480, CQ.Regalona.r1.5BG0007760, CQ.Regalona.r1.7AG0003560, CQ.Regalona.r1.9BG0002150
Anacardiaceae	Pistacia vera	5	pistato.v30004340, pistato.v30010870, pistato.v30062120 ... pistato.v30137150, pistato.v30285130
Apiaceae	Apium graveolens	4	Ag10G00185, Ag10G01602, Ag8G00135, Ag9G02803
Arecaceae	Cocos nucifera	3	COCNU_08G010330, COCNU_09G007700, COCNU_12G008240
Arecaceae	Phoenix dactylifera	3	gene-LOC103698531, gene-LOC103705555, gene-LOC103715502
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.886.V1.1, AsparagusV1_08.3602.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G16213, Ftri11G32386, Ftri13G00920, Ftri14G28222 ... Ftri15G14050, Ftri5G05474, Ftri7G12100, Ftri7G31082
Brassicaceae	Arabidopsis thaliana	6	AT1G01740.1, AT1G63500.1, AT3G54030.1, AT4G00710.1 ... AT5G41260.1, AT5G59010.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10007855m.g.v1.0, Thhalv10010321m.g.v1.0 ... Thhalv10013377m.g.v1.0, Thhalv10023428m.g.v1.0, Thhalv10027736m.g.v1.0, Thhalv10028608m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g00560.v2.2, Sp2g01110.v2.2, Sp5g08360.v2.2 ... Sp6g00690.v2.2, Sp6g20710.v2.2
Brassicaceae	Brassica nigra	10	BniB02g002120.2N, BniB02g038620.2N, BniB02g058400.2N ... BniB03g036850.2N, BniB04g022140.2N, BniB04g024180.2N, BniB05g038400.2N, BniB06g065710.2N, BniB08g041660.2N, BniB08g042850.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0365, Ceq05G0121, Ceq08G1079, Ceq08G1968
Casuarinaceae	Casuarina glauca	4	Cgl03G0461, Cgl05G0129, Cgl08G1103, Cgl08G2045
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g09440, gene.Cymno03g05880, gene.Cymno04g18290 ... gene.Cymno05g19590
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g02730, gene.Thate06g00100, gene.Thate08g01290 ... gene.Thate08g13180
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-506, nbisL1-mrna-6136, nbisL1-mrna-9504
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1098, evm.TU.LG04.880, evm.TU.LG09.1167 ... evm.TU.LG10.1378
Plantaginaceae	Plantago ovata	3	Pov_00002819, Pov_00003175, Pov_00017685
Plumbaginaceae	Limonium bicolor	7	Lb0G37152, Lb1G02227, Lb2G09244, Lb2G09261, Lb3G20494 ... Lb3G20686, Lb4G25121
Poaceae	Echinochloa crus-galli	6	AH01.435, AH09.2755, BH01.306, BH09.2999, CH01.145 ... CH07.1968
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0210100, gene-QOZ80_3BG0255250 ... gene-QOZ80_4AG0298880, gene-QOZ80_4BG0329590
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0214020.1, HORVU.MOREX.r3.5HG0527630.1 ... HORVU.MOREX.r3.7HG0707880.1
Poaceae	Lolium multiflorum	6	gene-QYE76_016985, gene-QYE76_033691, gene-QYE76_037247 ... gene-QYE76_047588, gene-QYE76_060611, gene-QYE76_060787
Poaceae	Oryza coarctata	3	Oco05G027710, Oco06G028670, Oco07G019650
Poaceae	Oryza sativa	2	LOC_Os03g61010.1, LOC_Os04g58750.3
Poaceae	Paspalum vaginatum	2	gene-BS78_01G026600, gene-BS78_06G289800
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105862, Pt_Chr0307052, Pt_Chr0402738, Pt_Chr0402766
Poaceae	Sporobolus alterniflorus	10	Chr01G001260, Chr02G011180, Chr02G016670, Chr04G031680 ... Chr07G030750, Chr12G032910, Chr23G000590, Chr25G000440, Chr26G018670, Chr30G000550
Poaceae	Thinopyrum elongatum	3	Tel2E01G983900, Tel5E01G773200, Tel7E01G562200
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG079270, gene_TRIDC2BG087590 ... gene_TRIDC5AG069360, gene_TRIDC5BG074930, gene_TRIDC7AG045920, gene_TRIDC7BG037910
Poaceae	Triticum aestivum	9	TraesCS2A02G582500.1, TraesCS2B02G604300.1 ... TraesCS2D02G597600.1, TraesCS5A02G487000.2, TraesCS5B02G500800.1, TraesCS5D02G501100.1, TraesCS7A02G328100.2, TraesCS7B02G228900.2, TraesCS7D02G324900.2
Poaceae	Zea mays	4	Zm00001eb063040_P002, Zm00001eb065720_P001 ... Zm00001eb211460_P001, Zm00001eb434080_P001
Poaceae	Zoysia japonica	1	nbis-gene-15540
Poaceae	Zoysia macrostachya	4	Zma_g141, Zma_g20717, Zma_g22261, Zma_g2461
Portulacaceae	Portulaca oleracea	8	evm.TU.LG04.2291, evm.TU.LG04.3384, evm.TU.LG06.19 ... evm.TU.LG16.214, evm.TU.LG19.919, evm.TU.LG19.984, evm.TU.LG24.921, evm.TU.LG24.988
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g40300, gene.Posoc02g14110, gene.Posoc07g15640
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.178, evm.TU.Scaffold_14_RagTag.192 ... evm.TU.Scaffold_1_RagTag.1744, evm.TU.Scaffold_5_RagTag.273
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10852, nbisL1-mrna-18201, nbisL1-mrna-22423 ... nbisL1-mrna-24621, nbisL1-mrna-5536
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11122, nbisL1-mrna-1436, nbisL1-mrna-15437 ... nbisL1-mrna-7019
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10523, nbisL1-mrna-19480, nbisL1-mrna-3755 ... nbisL1-mrna-8516
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000006l.178, evm.TU.utg000007l.255 ... evm.TU.utg000016l.651, evm.TU.utg000027l.455
Rhizophoraceae	Kandelia obovata	4	Maker00013485, Maker00016942, Maker00018044, Maker00018588
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16048, nbisL1-mrna-5001, nbisL1-mrna-5534 ... nbisL1-mrna-9201
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10889, nbisL1-mrna-11701, nbisL1-mrna-13703 ... nbisL1-mrna-7026
Salicaceae	Populus euphratica	9	populus_peu02069, populus_peu03559, populus_peu11377 ... populus_peu25695, populus_peu25719, populus_peu27716, populus_peu31678, populus_peu34395, populus_peu35738
Solanaceae	Lycium barbarum	5	gene-LOC132604557, gene-LOC132605975, gene-LOC132607024 ... gene-LOC132630599, gene-LOC132643648
Solanaceae	Solanum chilense	5	SOLCI002409600, SOLCI003087200, SOLCI003459700 ... SOLCI004438900, SOLCI006562500
Solanaceae	Solanum pennellii	5	gene-LOC107004676, gene-LOC107007519, gene-LOC107021781 ... gene-LOC107029150, gene-LOC107031952
Tamaricaceae	Reaumuria soongarica	3	STRG.23475_chr05_-, STRG.3141_chr01_+, gene_1436
Tamaricaceae	Tamarix chinensis	5	TC02G1831, TC03G2450, TC06G0229, TC07G0359, TC11G0150
Zosteraceae	Zostera marina	3	Zosma01g41040.v3.1, Zosma04g23150.v3.1, Zosma06g29160.v3.1