Basic Information
Locus ID:
Ag10G01591
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 192319486 | 192321906 | - | Ag10G01591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 25,302.83 Da | 52.03 | 79.41 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 120 | 181 | 9.0E-16 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 47 | 82 | 1.0E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 185 | 1.94E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 131 | 1.44E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 132 | 5.3E-17 | IPR013083 |
| Gene3D | G3DSA:2.20.25.20 | - | 138 | 186 | 2.8E-5 | - |
| SMART | SM00647 | ibrneu5 | 119 | 181 | 7.5E-23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 43 | 222 | 27.371202 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 94 | 9.627196 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 67 | 76 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_017239997.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Daucus carota subsp. sativus] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166C7C6 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 6 | Ag10G01591, Ag10G01592, Ag10G01814, Ag10G01815, Ag11G04339 ... |