Basic Information
Locus ID:
Ag10G01581
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 190884901 | 190892637 | + | Ag10G01581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.37 | 80,923.11 Da | 49.70 | 86.85 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14009 | STKc_ATG1_ULK_like | 20 | 271 | 9.082E-162 | - |
| Pfam | PF00069 | Protein kinase domain | 16 | 272 | 1.4E-72 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 282 | 2.16E-89 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 4 | 354 | 6.0E-89 | - |
| SMART | SM00220 | serkin_6 | 14 | 272 | 2.6E-100 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 14 | 272 | 51.636463 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 20 | 43 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 133 | 145 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 340 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37840.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017242828.1 | PREDICTED: serine/threonine-protein kinase ATG1c-like [Daucus carota subsp. sativus] | 0 |
| F4IRW0 | Serine/threonine-protein kinase ATG1c OS=Arabidopsis thaliana OX=3702 GN=ATG1C PE=2 SV=1 | 0 | |
| TrEMBL | A0A166C762 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012134 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.065672 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.153332 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.14554 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.048506 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.665072 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.657314 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.742877 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.903926 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.540804 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.61833 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.906882 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.350362 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.000496 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.475142 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.140048 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.771665 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.701148 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.374116 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.044166 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.396665 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.007673 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.922129 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.02119 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.78668 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.391686 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.660878 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.361119 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.341313 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.715084 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.638973 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.768364 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.401356 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.481904 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.406668 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.238381 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.920739 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.193661 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.141681 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.954241 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.795133 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.769155 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.708601 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.120829 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.267321 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.025925 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.341208 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.163043 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.805396 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.665281 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.745818 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14836, jg32534 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23485, gene_2461 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002224, Ah022761 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g001970, BVRB_5g112680 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg31671, Sbi_jg31672, Sbi_jg3791, Sbi_jg49044 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25321, Seu_jg6190 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000679, GOSA_00025815 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl10797, Sgl16150, Sgl59580, Sgl71885, Sgl75447 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000005846, gene:ENSEOMG00000014386 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0004240, CQ.Regalona.r1.2BG0027040 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30006670, pistato.v30284700, pistato.v30284720 |
| Apiaceae | Apium graveolens | 3 | Ag10G01581, Ag2G01872, Ag8G00153 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G006270, COCNU_16G008450 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702761, gene-LOC103716781, gene-LOC103720373 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.3609.V1.1, AsparagusV1_10.154.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G07909, Ftri3G18423 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G37840.1, AT3G53930.2, AT3G61960.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005839m.g.v1.0, Thhalv10010160m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g01390.v2.2, Sp5g08470.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g052690.2N, BniB06g065820.2N, BniB08g024040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0230, Ceq08G1103 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0250, Cgl08G1128 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g18080 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0421s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g34550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5880 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1138, evm.TU.LG04.602 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002854, Pov_00036177, Pov_00036178, Pov_00036179 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27402 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4219, AH01.5117, BH01.4526, BH01.5094, BH01.5252 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0231550, gene-QOZ80_3AG0242460 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0389130.1, HORVU.MOREX.r3.4HG0412570.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_069021, gene-QYE76_071301 |
| Poaceae | Oryza coarctata | 4 | Oco05G001300, Oco05G009220, Oco06G001260, Oco06G009580 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g02980.2, LOC_Os03g16130.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G404900, gene-BS78_01G501500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0100633, Pt_Chr0100651, Pt_Chr0102251, Pt_Chr0102260 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G030740, Chr01G038600, Chr04G006010, Chr04G007520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G370500, Tel4E01G569100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG012750, gene_TRIDC4BG037560 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G093800.2, TraesCS4B02G210600.2 ... |
| Poaceae | Zea mays | 6 | Zm00001eb001590_P001, Zm00001eb012000_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3111, nbis-gene-3782 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2209, Zma_g3946 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.2581, evm.TU.LG19.1347, evm.TU.LG24.1341 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g39810 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_1_RagTag.1721, evm.TU.Scaffold_2_RagTag.697 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-21559, nbisL1-mrna-4496, nbisL1-mrna-5515 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1454, nbisL1-mrna-3000, nbisL1-mrna-4712 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3769, nbisL1-mrna-7458, nbisL1-mrna-9523 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.173, evm.TU.utg000009l.1061 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00005335, Maker00016731, Maker00017553 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12736, nbisL1-mrna-1670, nbisL1-mrna-5011 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13686, nbisL1-mrna-16481, nbisL1-mrna-5380 |
| Salicaceae | Populus euphratica | 4 | populus_peu11366, populus_peu25710, populus_peu27481 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607030, gene-LOC132625798 |
| Solanaceae | Solanum chilense | 2 | SOLCI000200500, SOLCI005691800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002361, gene-LOC107031744 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.26551_chr11_+, STRG.3100_chr01_+, gene_15821 |
| Tamaricaceae | Tamarix chinensis | 3 | TC03G2098, TC07G0397, TC09G2407 |
| Zosteraceae | Zostera marina | 1 | Zosma01g41160.v3.1 |