Basic Information
Locus ID:
Ag10G01520
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
EFTS
Description:
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 186894464 | 186901148 | + | Ag10G01520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 116,942.12 Da | 44.76 | 83.79 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14275 | UBA_EF-Ts | 877 | 913 | 1.12422E-16 | - |
| CDD | cd14275 | UBA_EF-Ts | 637 | 672 | 2.72828E-15 | - |
| Pfam | PF00889 | Elongation factor TS | 926 | 1068 | 6.3E-30 | IPR014039 |
| Pfam | PF00575 | S1 RNA binding domain | 148 | 217 | 9.2E-16 | IPR003029 |
| Pfam | PF00889 | Elongation factor TS | 687 | 827 | 6.7E-32 | IPR014039 |
| SUPERFAMILY | SSF46934 | UBA-like | 874 | 925 | 3.3E-17 | IPR009060 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 143 | 219 | 1.93E-20 | IPR012340 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 927 | 1068 | 2.75E-43 | IPR036402 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 689 | 844 | 5.76E-44 | IPR036402 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 249 | 335 | 1.0E-8 | IPR012340 |
| SUPERFAMILY | SSF46934 | UBA-like | 634 | 684 | 3.6E-16 | IPR009060 |
| Gene3D | G3DSA:1.10.286.20 | - | 741 | 785 | 3.6E-49 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 631 | 684 | 3.2E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 872 | 926 | 3.9E-23 | - |
| Gene3D | G3DSA:1.10.286.20 | - | 983 | 1026 | 1.1E-11 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 927 | 1070 | 1.2E-33 | IPR036402 |
| Gene3D | G3DSA:2.40.50.140 | - | 244 | 333 | 2.4E-10 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 689 | 826 | 3.6E-49 | IPR036402 |
| Gene3D | G3DSA:2.40.50.140 | - | 139 | 220 | 6.3E-23 | - |
| SMART | SM00316 | S1_6 | 258 | 329 | 5.5E-8 | IPR022967 |
| SMART | SM00316 | S1_6 | 146 | 217 | 1.0E-22 | IPR022967 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 721 | 844 | 5.5E-31 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 873 | 970 | 1.6E-35 | IPR001816 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 148 | 217 | 21.483547 | IPR003029 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 260 | 329 | 15.206438 | IPR003029 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 882 | 897 | - | IPR018101 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 641 | 656 | - | IPR018101 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 872 | 1080 | 35.520004 | IPR001816 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 631 | 844 | 40.139549 | IPR001816 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 235 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29060.1 | elongation factor Ts family protein. | 0 |
| RefSeq | XP_017240202.1 | PREDICTED: uncharacterized protein LOC108212998 [Daucus carota subsp. sativus] | 0 |
| Q9SZD6 | Polyprotein of EF-Ts, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETs PE=1 SV=1 | 0 | |
| TrEMBL | A0A166C561 | Elongation factor Ts, mitochondrial OS=Daucus carota subsp. sativus OX=79200 GN=EFTS PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 31.112061 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 27.315689 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.699274 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.620882 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 24.024689 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 28.766056 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.806612 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.776337 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 71.896378 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 70.647087 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 73.06031 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 59.666317 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 71.380699 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 59.245758 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 25.246363 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.893921 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.610968 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 93.145264 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 88.387497 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 78.762245 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 86.000832 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.918332 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.281343 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.672157 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.575298 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 96.998734 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 70.056725 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 109.120842 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 75.371292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 28.125216 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 57.488972 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 44.183243 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 52.144234 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.542995 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 45.288456 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 45.313389 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 24.505127 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 26.972805 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 265.824524 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 202.534103 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 248.298294 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.282486 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.394091 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.244692 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.379917 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.534184 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.350168 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.796444 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.853865 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.745541 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15501, jg33837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9100 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25014, Sbi_jg8868 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007769, GOSA_00007770 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42256, Sgl47032 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009631, gene:ENSEOMG00000033644 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019800, CQ.Regalona.r1.8BG0022580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256850 |
| Apiaceae | Apium graveolens | 1 | Ag10G01520 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007630 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702876 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2252.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G02403, Ftri8G29592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024316m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g083910.2N, BniB05g007220.2N, BniB05g008470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0078s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g16210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003868 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29558, Lb6G30757 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3682, BH05.3703, CH05.3888 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393080, gene-QOZ80_5BG0441360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0444900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001962 |
| Poaceae | Oryza coarctata | 2 | Oco23G007930, Oco24G007530 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g35630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G089800, gene-BS78_K022400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703772 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G016580, Chr19G009600, Chr27G006830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G182200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG015330, gene_TRIDC5BG016440 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G093200.1, TraesCS5B02G099300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb078330_P001, Zm00001eb091120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30276 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25943 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2494, evm.TU.LG10.1532 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g07330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1927 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17578 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10199, nbisL1-mrna-21839, nbisL1-mrna-4696 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1099 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1210 |
| Salicaceae | Populus euphratica | 1 | populus_peu21951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603424 |
| Solanaceae | Solanum chilense | 1 | SOLCI006671800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025533 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11808, gene_9320 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1437 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02340.v3.1 |