Basic Information
Locus ID:
Ag10G01519
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
transcription, DNA-templated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 186760375 | 186761965 | - | Ag10G01519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 21,583.55 Da | 61.68 | 49.54 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 195 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28840.1 | 0 | |
| RefSeq | XP_017240294.1 | PREDICTED: protein SPEAR1 [Daucus carota subsp. sativus] | 0 |
| Q6IDB0 | Protein SPEAR3 OS=Arabidopsis thaliana OX=3702 GN=SPEAR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166C555 | SPOROCYTELESS-like EAR-containing protein 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012057 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.360808 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.105981 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.106492 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.095199 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.014883 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.336337 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.592517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.085098 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.32648 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.090339 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.263332 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.346941 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15499, jg3831 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10729, gene_10730 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014586, Ah014588 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g196910, BVRB_8g196920 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25016, Sbi_jg25018, Sbi_jg8870, Sbi_jg8871 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19733, Seu_jg19734 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00007766, GOSA_00007767, GOSA_00007768 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42258, Sgl42259, Sgl47034, Sgl47035 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009020, gene:ENSEOMG00000011088 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0019790, CQ.Regalona.r1.8BG0022590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256860 |
| Apiaceae | Apium graveolens | 1 | Ag10G01519 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G011780 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702543, gene-LOC103709535, gene-LOC103715592 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1941.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G09217, Ftri4G11347 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G20080.1, AT4G28840.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002311m.g.v1.0, Thhalv10026355m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g33380.v2.2, Sp7g26840.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g015950.2N, BniB02g083770.2N, BniB03g069650.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1581 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g16230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003870 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2732, AH05.1433, BH02.2814, BH05.1601, CH02.3727 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0028430, gene-QOZ80_1BG0078620 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015550 |
| Poaceae | Oryza coarctata | 4 | Oco01G017160, Oco02G017390, Oco09G016550, Oco10G016390 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48530.1, LOC_Os05g48570.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G229800, gene-BS78_09G232100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505757, Pt_Chr0602335 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G015470, Chr02G012810, Chr03G000710, Chr03G013400 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G638800, Tel3E01G446400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG040150, gene_TRIDC3BG045350 |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G389800.1, TraesCS1B02G417900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156860_P001, Zm00001eb343410_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13696, nbis-gene-24884, nbis-gene-26078 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10865, Zma_g27363, Zma_g28782, Zma_g8422 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2859, evm.TU.LG02.2860, evm.TU.LG06.980 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1926 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13091, nbisL1-mrna-25649 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11976, nbisL1-mrna-1774 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16837, nbisL1-mrna-4695 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1098, evm.TU.utg000033l.298 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000229 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14784, nbisL1-mrna-18356 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1209, nbisL1-mrna-8268 |
| Salicaceae | Populus euphratica | 3 | populus_peu19337, populus_peu21952, populus_peu26631 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602266, gene-LOC132638775 |
| Solanaceae | Solanum chilense | 2 | SOLCI004345800, SOLCI006671900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006862, gene-LOC107025703 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.2463_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1435 |