Basic Information
Locus ID:
Ag10G01505
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 185237649 | 185238329 | + | Ag10G01505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 13,912.77 Da | 47.46 | 80.00 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 65 | 112 | 6.4E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 116 | 1.18E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 117 | 1.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 65 | 111 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 65 | 112 | 12.326995 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_028122456.1 | E3 ubiquitin-protein ligase RNF115-like [Camellia sinensis] | 0 |
| TrEMBL | A0A166C4R8 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012042 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.380744 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.311623 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.560118 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 32.450005 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.705721 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 71.820938 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 69.74353 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 39.283646 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.900512 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.300265 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.12993 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 39.805176 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.243385 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 45.375744 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.204662 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.455313 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.688743 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.880787 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.211561 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.994214 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.626224 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.146517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.098906 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.380811 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.291754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.494675 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.488737 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.388107 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.973761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.100739 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.962433 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.662401 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.798012 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.139145 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.13962 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.185934 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.189593 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.083968 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 44.999096 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.175535 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.831427 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.41858 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.757645 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.96436 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.758337 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.684909 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.856637 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31653, jg32975 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_9114, gene_9115, gene_9116 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014636 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_8g197390, BVRB_8g197400, BVRB_8g197420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25057, Sbi_jg25058, Sbi_jg8905, Sbi_jg8906 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19692, Seu_jg19693 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007729, GOSA_00007730 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl42298, Sgl42299, Sgl42300, Sgl47073, Sgl47074, Sgl47075 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046235 |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.8AG0019470, CQ.Regalona.r1.8AG0019480 ... |
| Apiaceae | Apium graveolens | 2 | Ag10G01505, Ag10G01506 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.403.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G09071, Ftri14G13975, Ftri4G15712 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G30460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005099m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g18190.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g069060.2N, BniB07g036930.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g03860 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003463 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.456, AH02.3821, BH01.285, BH02.3833, BH07.4143 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0038480, gene-QOZ80_1BG0088420 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469700.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004057 |
| Poaceae | Oryza coarctata | 2 | Oco05G007840, Oco17G001140 |
| Poaceae | Oryza sativa | 3 | LOC_Os09g06740.1, LOC_Os09g06770.1, LOC_Os09g27380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G473600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705057 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G022220, Chr04G022230, Chr06G023980, Chr06G023990 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G283400, Tel7E01G900000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG027500, gene_TRIDC5BG028900 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G167100.1.cds1, TraesCS5B02G164100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb257980_P001 |
| Poaceae | Zoysia japonica | 6 | nbis-gene-25639, nbis-gene-25643, nbis-gene-46362 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g24738, Zma_g24740, Zma_g25498 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2807, evm.TU.LG23.1012 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.459 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13064, nbisL1-mrna-23655 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12720 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16856 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000033l.102 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015047 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18348 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8248 |
| Salicaceae | Populus euphratica | 3 | populus_peu05398, populus_peu11952, populus_peu37477 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132637983, gene-LOC132642548 |
| Solanaceae | Solanum chilense | 3 | SOLCI004118400, SOLCI004479000, SOLCI005953500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005918 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1482 |