Basic Information
Locus ID:
Ag10G01466
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
acyl- acyl-carrier-protein --UDP-N-acetylglucosamine O-acyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 183681348 | 183687722 | - | Ag10G01466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 38,025.06 Da | 40.14 | 87.19 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03351 | LbH_UDP-GlcNAc_AT | 59 | 340 | 3.38537E-115 | IPR010137 |
| Pfam | PF13720 | Udp N-acetylglucosamine O-acyltransferase; Domain 2 | 253 | 341 | 6.1E-22 | IPR029098 |
| Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 182 | 216 | 6.3E-7 | IPR001451 |
| Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 57 | 90 | 2.6E-4 | IPR001451 |
| SUPERFAMILY | SSF51161 | Trimeric LpxA-like enzymes | 42 | 268 | 2.95E-47 | IPR011004 |
| Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 52 | 270 | 3.9E-65 | - |
| Gene3D | G3DSA:1.20.1180.10 | - | 271 | 350 | 4.0E-30 | IPR037157 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29540.2 | bacterial transferase hexapeptide repeat-containing protein. | 0 |
| RefSeq | XP_017240250.1 | PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SU91 | Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXA PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6SR94 | probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X1 OS=Coffea arabica OX=13443 GN=LOC113693849 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.46137 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.147433 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.916803 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.642861 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.309313 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.402503 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.205285 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.815045 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.174659 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.27651 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.531078 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.757346 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.315657 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.324152 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.642996 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.559778 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.150014 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.900957 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.187035 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.963304 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.021091 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.651137 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.230747 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.43274 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.151861 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.437017 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.621341 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.245988 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.791593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.934799 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.929494 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.91515 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.45525 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.423716 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.479962 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.416017 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.671023 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.154655 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.11697 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.576566 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.672921 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.041506 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.481418 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.299397 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.986562 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.286059 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.529708 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.28545 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.307205 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.506165 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15444 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9447 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015606 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25266, Sbi_jg9117 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19477 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43081, Sgl47893 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009839, gene:ENSEOMG00000035223 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013410, CQ.Regalona.r1.8BG0014220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30258030 |
| Apiaceae | Apium graveolens | 1 | Ag10G01466 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G003160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711199 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2526.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G10639 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29540.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025613m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27400.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g011310.2N, BniB05g008050.2N, BniB05g008060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0874 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02930 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1216 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07619 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3010, BH02.3098, CH02.3425 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0031460, gene-QOZ80_1BG0081480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0285740.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054980, gene-QYE76_054982 |
| Poaceae | Oryza coarctata | 2 | Oco01G020300, Oco02G019510 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g52400.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G259700, gene-BS78_K316900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0602831, Pt_Chr0602847 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G010960, Chr05G022680, Chr0G030860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G470000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG042280, gene_TRIDC3BG048190 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G286700.1, TraesCS3B02G320900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb361670_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26328 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11036 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g06240 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.1848, evm.TU.Scaffold_4_RagTag.1849 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25734 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5087 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-23078, nbisL1-mrna-4633 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1049 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000979 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14834 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1143 |
| Salicaceae | Populus euphratica | 1 | populus_peu11938 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636863 |
| Solanaceae | Solanum chilense | 1 | SOLCI001664700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005208 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7354 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1722 |
| Zosteraceae | Zostera marina | 1 | Zosma05g00890.v3.1 |