Basic Information
Locus ID:
Ag10G01463
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 183633989 | 183635822 | + | Ag10G01463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 36,539.32 Da | 42.95 | 111.02 | 0.38 |
Protein Domain:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29660.1 | embryo defective 2752. | 0 |
| RefSeq | XP_017240293.1 | PREDICTED: PRA1 family protein F2-like [Daucus carota subsp. sativus] | 0 |
| Q94K18 | Uncharacterized protein At4g29660 OS=Arabidopsis thaliana OX=3702 GN=EMB2752 PE=4 SV=1 | 0 | |
| TrEMBL | A0A166C3A1 | PRA1 family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011984 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.566051 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.488249 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.53768 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.738533 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.254535 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.742135 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.998003 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.725718 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.88038 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.812985 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.204801 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.208899 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.480815 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.135244 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.861427 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.152486 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.100038 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.488537 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.135592 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.740919 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.03865 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.98028 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.318884 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.507793 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.581188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.134181 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.103564 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.268751 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.405339 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.968192 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.752915 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.037683 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.887681 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.256163 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.591822 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.70991 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.691056 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.590574 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.912457 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.020982 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.571185 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.031019 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.624561 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.80803 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.364687 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.299217 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.529825 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.974108 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.244637 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.497036 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4245 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15197 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035416 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g026070 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg21176 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16515 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016290 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62605, Sgl67152 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018493, gene:ENSEOMG00000019613 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0018160, CQ.Regalona.r1.2AG0019950 ... |
| Apiaceae | Apium graveolens | 1 | Ag10G01463 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G003920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711989 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3294.V1.1, AsparagusV1_01.423.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G14196 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026646m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g29900.v2.2, Sp7g27450.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0864 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0893 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01190 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g15850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12021 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1226 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039649 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03525, Lb2G13127 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1584, BH05.1738, CH04.2146 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0365050, gene-QOZ80_5BG0412930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0080600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016286 |
| Poaceae | Oryza coarctata | 2 | Oco09G015470, Oco10G015360 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g46280.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503887, Pt_Chr0503905 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G014810, Chr12G022110, Chr18G015190, Chr22G002530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G586600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG053150, gene_TRIDC1BG060800 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G361300.1, TraesCS1B02G377900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb294300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13804 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27296 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG10.500 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1842 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25740 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5083 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4628 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1045 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000899 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14838 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1138 |
| Salicaceae | Populus euphratica | 1 | populus_peu29519 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636868 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005310 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7357 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1733 |