Basic Information
Locus ID:
Ag10G01456
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Glutamate-rich WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 183576557 | 183581151 | + | Ag10G01456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 52,554.87 Da | 50.18 | 74.92 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 394 | 0.008 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 49 | 115 | 4.0E-15 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 303 | 8.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 347 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 158 | 455 | 7.75E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 34 | 461 | 7.3E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 217 | 256 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 394 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 347 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 193 | 0.32 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 303 | 1.1E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 361 | 396 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 361 | 403 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 312 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 349 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 305 | 9.757418 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 381 | 395 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| Coils | Coil | Coil | 397 | 417 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19540.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017237387.1 | PREDICTED: glutamate-rich WD repeat-containing protein 1 [Daucus carota subsp. sativus] | 0 |
| Q9ZUN8 | Protein HEAT STRESS TOLERANT DWD 1 OS=Arabidopsis thaliana OX=3702 GN=HTD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166C356 | CAF1C_H4-bd domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011977 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 56.818691 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 41.356949 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 25.933779 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.739861 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.043034 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 39.586586 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.862991 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.915245 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 73.636009 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 79.096161 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 98.149429 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 80.374428 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 81.252403 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 62.522739 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.493912 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.844021 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.043625 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.843929 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.301104 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 35.533211 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.015423 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.031013 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.347427 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 37.398758 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.438877 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.48271 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.288321 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.525978 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.909887 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.633144 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 40.387001 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 38.589264 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 44.638481 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 47.677422 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 51.297573 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 35.627258 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 29.195999 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 27.063421 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.446888 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.018056 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.040801 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 41.699074 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 24.89525 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 54.239384 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 36.103264 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 55.413631 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.383133 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 52.674744 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 43.329544 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 49.138138 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14730, jg3215 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11057 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015368 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg25341, Sbi_jg29451, Sbi_jg3696, Sbi_jg3697, Sbi_jg9193 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19396, Seu_jg6280 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011154 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42909, Sgl47701, Sgl47749 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009399, gene:ENSEOMG00000035333 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014210, CQ.Regalona.r1.8BG0015600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30258160 |
| Apiaceae | Apium graveolens | 1 | Ag10G01456 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000340, scaffold006552G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720882 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1704.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G15028 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G19540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022672m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32920.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g045160.2N, BniB02g015660.2N, BniB03g068870.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0888 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02750 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0734s00001.v1.0, Dusal.1675s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1230 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002642, Pov_00027181 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20577 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.154, AH05.117, BH01.3123, BH04.189, BH05.126, CH01.3356 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0116890, gene-QOZ80_5AG0380300 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0356500.1, HORVU.MOREX.r3.5HG0462210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065197 |
| Poaceae | Oryza coarctata | 4 | Oco21G000480, Oco22G001250, Oco23G001250, Oco24G000620 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g03990.1, LOC_Os12g03822.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G231900, gene-BS78_05G031800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103699, Pt_Chr0103705 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021620, Chr06G023220, Chr16G008960, Chr17G007980 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G203400, Tel5E01G245400, Tel7E01G360200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029960, gene_TRIDC4BG020620 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G187400.1, TraesCS4B02G131200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163470_P003, Zm00001eb354080_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25731, nbis-gene-27017 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18384 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1586, evm.TU.LG22.481 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19720 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1668, evm.TU.Scaffold_2_RagTag.757 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4426 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19859, nbisL1-mrna-8173 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3813, nbisL1-mrna-9475 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1098, evm.TU.utg000016l.611 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005754, Maker00016378 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12699, nbisL1-mrna-5037, nbisL1-mrna-5038 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13641, nbisL1-mrna-5959 |
| Salicaceae | Populus euphratica | 2 | populus_peu13761, populus_peu22920 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617872 |
| Solanaceae | Solanum chilense | 2 | SOLCI000734300, SOLCI002959800 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107018817, gene-LOC107019265, gene-LOC107019516 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6534 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1777 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00190.v3.1, Zosma06g11720.v3.1 |