Basic Information
Locus ID:
Ag10G01441
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NPR1/NIM1 like defence protein C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 182712597 | 182716779 | + | Ag10G01441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 64,702.12 Da | 43.26 | 94.63 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18310 | BTB_POZ_NPR_plant | 32 | 176 | 8.20983E-56 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 257 | 341 | 1.9E-6 | IPR020683 |
| Pfam | PF00651 | BTB/POZ domain | 52 | 172 | 3.0E-10 | IPR000210 |
| Pfam | PF12313 | NPR1/NIM1 like defence protein C terminal | 356 | 558 | 5.3E-87 | IPR021094 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 249 | 357 | 8.71E-16 | IPR036770 |
| SUPERFAMILY | SSF54695 | POZ domain | 50 | 174 | 3.37E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 19 | 210 | 3.3E-18 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 241 | 437 | 2.1E-17 | IPR036770 |
| SMART | SM00248 | ANK_2a | 251 | 281 | 380.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 314 | 343 | 0.24 | IPR002110 |
| SMART | SM00225 | BTB_4 | 53 | 176 | 7.5E-14 | IPR000210 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 314 | 339 | 8.932349 | - |
| ProSiteProfiles | PS50097 | BTB domain profile. | 53 | 126 | 15.638638 | IPR000210 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 314 | 346 | 9.37738 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 579 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64280.1 | regulatory protein (NPR1). This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens. | 0 |
| RefSeq | XP_017242760.1 | PREDICTED: regulatory protein NPR1 [Daucus carota subsp. sativus] | 0 |
| Q5D0W8 | BTB/POZ domain and ankyrin repeat-containing protein NPR1 OS=Oryza sativa subsp. indica OX=39946 GN=NPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BHM4 | Putative NPR1 OS=Davidia involucrata OX=16924 GN=Din_037179 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.024759 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.501931 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.123949 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.253163 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.709624 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.419583 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.086224 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.938544 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.221235 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.67568 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.054093 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.753825 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.142456 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.643818 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.06908 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.257234 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.469449 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.303908 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.856147 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.467171 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.885403 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.052906 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.417985 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.718915 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.000499 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.707523 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.078866 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.86502 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.596625 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.899356 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.297203 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.335922 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.466496 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.277456 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.616098 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.641564 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.685934 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.440008 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.151395 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.93441 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.232414 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.526804 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.493244 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.433431 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.899141 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.574862 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.554337 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.094663 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.207935 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.25672 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20876, jg24099, jg32913, jg37460 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015177 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24590, Sbi_jg8451 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28716 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41783, Sgl46585 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011052, gene:ENSEOMG00000034168 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014830, CQ.Regalona.r1.8BG0016030 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30013180, pistato.v30078240, pistato.v30108090 ... |
| Apiaceae | Apium graveolens | 4 | Ag10G01441, Ag6G01202, Ag7G01075, Ag9G02479 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G001470, COCNU_03G015070, COCNU_06G018980 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103702021, gene-LOC103705401, gene-LOC103719294 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2375.V1.1, AsparagusV1_07.3159.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G10356, Ftri18G17771, Ftri1G03889, Ftri8G26191 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64280.1, AT4G19660.1, AT4G26120.1, AT5G45110.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000824m.g.v1.0, Thhalv10023365m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00470.v2.2, Sp2g09920.v2.2, Sp7g18230.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g062170.2N, BniB03g012550.2N, BniB04g012090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1445, Ceq02G2177, Ceq06G0842 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1490, Cgl02G2254, Cgl06G0867 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g11640, gene.Cymno06g03730, gene.Cymno13g03260 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate02g24240, gene.Thate02g24260, gene.Thate04g03600 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4692, nbisL1-mrna-5499 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG04.2266, evm.TU.LG07.1255, evm.TU.LG12.195 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002953, Pov_00031763, Pov_00038621 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14534 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1393, AH02.314, AH02.3395, BH01.1258, BH02.342 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0013110, gene-QOZ80_1AG0034640 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0236240.1, HORVU.MOREX.r3.3HG0291620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050132, gene-QYE76_055455, gene-QYE76_063196 |
| Poaceae | Oryza coarctata | 6 | Oco01G004120, Oco01G021250, Oco02G004140, Oco02G021840 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g09800.1, LOC_Os01g56200.1, LOC_Os03g46440.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G132500, gene-BS78_03G030700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205292, Pt_Chr0602092, Pt_Chr0602113, Pt_Chr0602542 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G008640, Chr02G008560, Chr02G021010, Chr03G006430 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G515200, Tel3E01G183200, Tel3E01G183400 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG012960, gene_TRIDC3AG044830 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G105400.1, TraesCS3A02G298800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb065420_P002, Zm00001eb121040_P001 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-11812, nbis-gene-13337, nbis-gene-20590 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g11226, Zma_g3112, Zma_g7805, Zma_g792, Zma_g794 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1529, evm.TU.LG07.1191 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g21400, gene.Posoc10g09380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.1823, evm.TU.Scaffold_4_RagTag.1825 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25755 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1031 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000920 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14853, nbisL1-mrna-14854 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1122, nbisL1-mrna-1123 |
| Salicaceae | Populus euphratica | 5 | populus_peu11921, populus_peu15006, populus_peu29049 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616465, gene-LOC132620290, gene-LOC132621418 |
| Solanaceae | Solanum chilense | 1 | SOLCI001298000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011476, gene-LOC107026249, gene-LOC107026404 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6528 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1776 |
| Zosteraceae | Zostera marina | 2 | Zosma03g24130.v3.1, Zosma06g12380.v3.1 |