Basic Information
Locus ID:
Ag10G01284
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 172904562 | 172909269 | - | Ag10G01284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 33,980.54 Da | 44.14 | 96.82 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 91 | 243 | 7.22549E-45 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 92 | 274 | 9.3E-40 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 89 | 278 | 5.08E-39 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 84 | 281 | 2.3E-44 | IPR023214 |
| SMART | SM00577 | forpap2 | 90 | 253 | 4.8E-49 | IPR004274 |
| TIGRFAM | TIGR02251 | HIF-SF_euk: dullard-like phosphatase domain | 91 | 277 | 9.8E-52 | IPR011948 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 87 | 267 | 34.883652 | IPR004274 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55960.1 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein. | 0 |
| RefSeq | XP_017243411.1 | PREDICTED: CTD nuclear envelope phosphatase 1 homolog [Daucus carota subsp. sativus] | 0 |
| Q54GB2 | CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=ctdspl2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A161Y1L3 | FCP1 homology domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011813 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.80707 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.716326 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 25.489971 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.878677 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 24.730612 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.779331 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.911137 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 21.288145 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 62.366688 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 63.213577 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 68.631355 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 58.142479 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 53.792099 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 51.37077 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 47.358978 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 41.188061 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 37.616936 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 66.391418 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 57.570499 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 62.12899 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 56.703716 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 46.636971 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 44.353653 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.442814 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 43.49353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 60.804043 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 72.910355 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 52.690777 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.237701 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 42.96962 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 35.375801 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 32.779457 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 113.083847 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 75.799339 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 123.644226 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 84.964279 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 47.915226 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 59.835754 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 33.580063 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.883522 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.828041 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 69.385818 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 78.505669 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 69.516136 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.527287 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 61.285988 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 65.98262 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 58.515759 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 60.715282 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 62.503101 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2590, jg34129 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17005 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035325 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21432, Sbi_jg22419 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16303 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016458 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62851, Sgl67469 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018825, gene:ENSEOMG00000021976 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0019870, CQ.Regalona.r1.2AG0021620 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30177000, pistato.v30267050 |
| Apiaceae | Apium graveolens | 1 | Ag10G01284 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003110, COCNU_04G014060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709587, gene-LOC103718402 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.250.V1.1, AsparagusV1_07.465.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G33773, Ftri9G13714 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55960.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006119m.g.v1.0, Thhalv10016941m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g22460.v2.2, Sp5g06570.v2.2, Sp5g18250.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g005200.2N, BniB06g056640.2N, BniB08g070510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0126, Ceq08G1014 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0133, Cgl02G0139, Cgl08G1036 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g16460, gene.Cymno05g15460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0561s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3943 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1875 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040515 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02629, Lb7G33667 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3772, AH05.2098, BH02.3784, BH05.2232, BH07.4099 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038850, gene-QOZ80_1BG0088870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0072440.1, HORVU.MOREX.r3.3HG0303690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014241, gene-QYE76_055606 |
| Poaceae | Oryza coarctata | 4 | Oco01G024120, Oco02G024890, Oco09G011820, Oco10G011780 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g61640.1, LOC_Os05g39070.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G326200, gene-BS78_09G171800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0502002, Pt_Chr0506097, Pt_Chr0601928, Pt_Chr0602017 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G005510, Chr03G019410, Chr05G027880, Chr08G022650 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G473000, Tel3E01G564100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG043510, gene_TRIDC1BG049370 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G292000.2, TraesCS1B02G301400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb148930_P002, Zm00001eb351710_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11505, nbis-gene-24176, nbis-gene-31526 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11476, Zma_g28406, Zma_g8937 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.164, evm.TU.LG10.989, evm.TU.LG17.991 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.321, evm.TU.Scaffold_4_RagTag.956 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14094, nbisL1-mrna-25906 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16654, nbisL1-mrna-2715 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14245, nbisL1-mrna-1451 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.614 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000748, Maker00010094 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1974, nbisL1-mrna-439 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18893, nbisL1-mrna-9291 |
| Salicaceae | Populus euphratica | 4 | populus_peu06551, populus_peu11436, populus_peu20432 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608992, gene-LOC132640397 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020957, gene-LOC107023732 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21547_chr08_-, gene_10712 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1805, TC08G0918 |
| Zosteraceae | Zostera marina | 1 | Zosma02g21580.v3.1 |