Basic Information
Locus ID:
Ag10G01260
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
COI1
Description:
Coronatine-insensitive protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 171322970 | 171326478 | - | Ag10G01260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 67,233.07 Da | 44.73 | 98.01 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 14 | 54 | 8.7E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 74 | 119 | 4.7E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 91 | 404 | 7.18E-25 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 366 | 521 | 1.41E-12 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 52 | 4.6E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 588 | 3.7E-200 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 484 | 509 | 630.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 219 | 244 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 432 | 458 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 374 | 398 | 35.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39940.1 | RNI-like superfamily protein. Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation. | 0 |
| RefSeq | XP_017237411.1 | PREDICTED: coronatine-insensitive protein 1-like [Daucus carota subsp. sativus] | 0 |
| O04197 | Coronatine-insensitive protein 1 OS=Arabidopsis thaliana OX=3702 GN=COI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166BY00 | Coronatine insensitive 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.0143 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.858633 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.288049 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.223917 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.600818 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.718133 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.78889 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.644393 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.687636 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.760437 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.508793 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.128118 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.781139 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.186886 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.659466 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.312341 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.584113 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.749604 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.791123 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.988271 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.266006 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.678692 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.506744 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.835537 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.675249 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.775062 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.65022 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.440662 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.700962 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.894868 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.347663 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.847269 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 14.118773 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.462865 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.312003 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.565845 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.544597 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.504089 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.746052 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.284414 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.713643 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.672445 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.57709 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.246376 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.302459 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.379291 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.207216 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.276835 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.559218 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.012188 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14306, jg2613, jg34153, jg9998 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16984 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah005981, Ah014677, Ah024835, Ah024836, Ah035260 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g024250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21373, Sbi_jg22478 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16356 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007707, GOSA_00016414 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42329, Sgl42367, Sgl47107, Sgl62916, Sgl67524 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000012395, gene:ENSEOMG00000018665 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019410, CQ.Regalona.r1.2AG0021110 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30176510 |
| Apiaceae | Apium graveolens | 4 | Ag10G01260, Ag5G01402, Ag8G00467, AgUnG00255 |
| Arecaceae | Cocos nucifera | 3 | COCNU_12G008680, COCNU_16G008650, scaffold010560G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695487, gene-LOC103723578, gene-LOC103723671 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.22.V1.1, AsparagusV1_08.3568.V1.1 |
| Asteraceae | Flaveria trinervia | 6 | Ftri17G02002, Ftri17G20419, Ftri17G29930, Ftri6G04037 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016416m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g22250.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g005360.2N, BniB06g004890.2N, BniB08g025670.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0177, Ceq08G0061 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0197 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g07800, gene.Cymno18g00130 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02570, gene.Thate02g17440, gene.Thate08g13340 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10932, nbisL1-mrna-3965 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1832 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011824, Pov_00040453 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06540, Lb7G33801, Lb7G33804 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.4243, AH02.3911, AH05.2230, BH01.4549, BH02.3933 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0040250, gene-QOZ80_1BG0090300 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0074250.1, HORVU.MOREX.r3.3HG0301480.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014411, gene-QYE76_056438, gene-QYE76_069104 |
| Poaceae | Oryza coarctata | 7 | Oco01G025160, Oco02G026070, Oco05G009030, Oco06G009390 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g63420.1, LOC_Os03g15880.4, LOC_Os05g37690.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G406900, gene-BS78_03G339600 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0102204, Pt_Chr0102225, Pt_Chr0202640, Pt_Chr0300043 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G019550, Chr01G030580, Chr02G004400, Chr04G007330 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G454000, Tel3E01G585500, Tel4E01G374600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG041510, gene_TRIDC1BG047280 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G279100.1, TraesCS1B02G288100.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb011780_P003, Zm00001eb147720_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-11370, nbis-gene-2147, nbis-gene-24070 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11560, Zma_g1570, Zma_g3964, Zma_g9018 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG05.192, evm.TU.LG05.977, evm.TU.LG10.1036 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g04150, gene.Posoc07g15830 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.340, evm.TU.Scaffold_4_RagTag.993 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14071, nbisL1-mrna-25936 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15138, nbisL1-mrna-1788 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1417, nbisL1-mrna-14227 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.148, evm.TU.utg000008l.640 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000276, Maker00010218 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2002, nbisL1-mrna-455 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18875, nbisL1-mrna-9324, nbisL1-mrna-9657 |
| Salicaceae | Populus euphratica | 2 | populus_peu06512, populus_peu20389 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640389 |
| Solanaceae | Solanum chilense | 1 | SOLCI003808900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020531 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13159_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1010 |
| Zosteraceae | Zostera marina | 4 | Zosma01g21340.v3.1, Zosma01g23720.v3.1, Zosma06g27780.v3.1 ... |