Basic Information
Locus ID:
Ag10G01202
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
cell division
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 167080045 | 167087707 | - | Ag10G01202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 85,709.76 Da | 52.42 | 72.62 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 39 | 65 | 0.048 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 315 | 5.13E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 176 | 343 | 4.4E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 175 | 2.9E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 73 | 116 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 66 | 0.044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 287 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 202 | 0.86 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 158 | 0.035 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 211 | 9.03805 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 379 | - | - |
| Coils | Coil | Coil | 761 | 789 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05970.1 | Transducin/WD40 repeat-like superfamily protein. a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis | 0 |
| RefSeq | XP_017242181.1 | PREDICTED: protein NEDD1 [Daucus carota subsp. sativus] | 0 |
| B3H5K9 | Protein NEDD1 OS=Arabidopsis thaliana OX=3702 GN=NEDD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166BX19 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011747 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.703321 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.328286 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.172545 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.767434 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.4757 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.047612 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.099718 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.648504 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.558214 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.545397 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.596674 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.186213 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.630098 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.503418 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.642718 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.451099 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.549194 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.012211 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.623051 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.745851 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.426959 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.198997 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.463169 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.027922 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.189735 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.1452 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.71783 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.482363 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.211699 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.041208 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.948492 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.244349 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.106152 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.488276 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.579753 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.838439 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.517506 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.668986 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.412581 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.928748 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.421326 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.666156 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.012888 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.150552 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.720776 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.564 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.989944 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.177182 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.012222 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.211275 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34197 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1084, gene_15708 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020012 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38169, Sbi_jg6290 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15560 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003620 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01571, Sgl06742 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029735, gene:ENSEOMG00000043344 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013020, CQ.Regalona.r1.3BG0013070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175980 |
| Apiaceae | Apium graveolens | 1 | Ag10G01202 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G001260, COCNU_12G008120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697585, gene-LOC103704120 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3608.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G33422 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05970.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012734m.g.v1.0, Thhalv10020101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g09610.v2.2, Sp6g36920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g053750.2N, BniB02g054740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1169 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00990 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0075s00018.v1.0, Dusal.0178s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate03g13590, gene.Thate03g20800, gene.Thate04g17670 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1976, nbisL1-mrna-3967 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1788 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038786 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05339 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.1384, BH03.1506 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0521880, gene-QOZ80_6BG0476940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0470640.1 |
| Poaceae | Oryza coarctata | 2 | Oco17G001370, Oco18G001290 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g09470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G150100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702789, Pt_Chr0702792 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G003340, Chr11G015950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G300000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG028140, gene_TRIDC5BG029600 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G171300.1, TraesCS5B02G168800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb095480_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28722 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29719 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1642, evm.TU.LG11.995 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.359, evm.TU.Scaffold_4_RagTag.1767 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14057, nbisL1-mrna-25971 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4, nbisL1-mrna-986 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14211, nbisL1-mrna-4568 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.136, evm.TU.utg000008l.989 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000753, Maker00010047 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2063, nbisL1-mrna-468 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24376, nbisL1-mrna-9417 |
| Salicaceae | Populus euphratica | 2 | populus_peu06479, populus_peu20347 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637738 |
| Solanaceae | Solanum chilense | 1 | SOLCI001325000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3640 |
| Zosteraceae | Zostera marina | 2 | Zosma01g15990.v3.1, Zosma04g15340.v3.1 |