halophFGD

Basic Information

Locus ID: Ag10G01159

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: triosephosphate isomerase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	163789769	163795329	+	Ag10G01159

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.38	26,975.60 Da	26.94	94.76	0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00311	TIM	5	246	8.90793E-118	IPR000652
Pfam	PF00121	Triosephosphate isomerase	6	245	7.2E-88	IPR000652
SUPERFAMILY	SSF51351	Triosephosphate isomerase (TIM)	2	247	7.85E-93	IPR035990
Gene3D	G3DSA:3.20.20.70	Aldolase class I	1	253	1.0E-115	IPR013785
TIGRFAM	TIGR00419	tim: triose-phosphate isomerase	6	240	6.5E-92	IPR000652
ProSiteProfiles	PS51440	Triosephosphate isomerase (TIM) family profile.	4	247	81.302841	IPR000652
ProSitePatterns	PS00171	Triosephosphate isomerase active site.	164	174	-	IPR020861
Hamap	MF_00147_B	Triosephosphate isomerase [tpiA].	3	247	57.174988	IPR022896

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004807 (triose-phosphate isomerase activity)

KEGG Pathway

KO Term:

K01803 (triosephosphate isomerase (TIM) [EC:5.3.1.1])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00051 (Fructose and mannose metabolism) map00051 (Fructose and mannose metabolism) ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00003 (Gluconeogenesis, oxaloacetate => fructose-6P)

Reaction:

R01015 (D-Glyceraldehyde 3-phosphate <=> Glycerone phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G55440.1	triosephosphate isomerase. Encodes triosephosphate isomerase.
RefSeq	XP_017241668.1	PREDICTED: triosephosphate isomerase, cytosolic [Daucus carota subsp. sativus]
Swiss-Prot	P48495	Triosephosphate isomerase, cytosolic OS=Petunia hybrida OX=4102 GN=TPIP1 PE=2 SV=1
TrEMBL	A0A166BVZ7	Triosephosphate isomerase, cytosolic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011707 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	578.404846	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	442.433411	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	380.962158	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	382.480347	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	389.836304	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	227.830475	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	239.837845	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	151.961899	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	827.799072	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	820.545593	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	786.953979	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	866.976257	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	884.209167	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	948.338379	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	760.396545	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	894.749207	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	855.465454	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	918.700256	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	897.73999	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	896.124207	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	929.725098	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1128.840942	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1172.911011	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1004.121338	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	968.88855	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	997.259033	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	907.905457	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	915.227966	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	915.713501	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	642.980164		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	536.161072		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	565.613525		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	571.269348		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	615.69751		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	501.111145		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	764.621887		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	767.41687		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	865.393066		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	576.802795	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	712.404053	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	855.971863	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	378.039307	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	424.142639	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	474.523834	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	375.887115	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	445.771362	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	370.256714	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	882.324829	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	810.565308	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	780.77655	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14328, jg30336
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16565, gene_21873, gene_5887
Amaranthaceae	Atriplex hortensis	3	Ah009729, Ah028026, Ah035393
Amaranthaceae	Beta vulgaris	3	BVRB_2g024780, BVRB_7g173820, BVRB_9g214650
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12142, Sbi_jg1756, Sbi_jg21196, Sbi_jg22607 ... Sbi_jg34777, Sbi_jg47081
Amaranthaceae	Salicornia europaea	3	Seu_jg16499, Seu_jg21365, Seu_jg2995
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003202, GOSA_00016309, GOSA_00020375
Amaranthaceae	Suaeda glauca	8	Sgl55393, Sgl61514, Sgl62583, Sgl62584, Sgl67130, Sgl67131 ... Sgl73032, Sgl76571
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008065, gene:ENSEOMG00000015257 ... gene:ENSEOMG00000017657, gene:ENSEOMG00000017727, gene:ENSEOMG00000037647, gene:ENSEOMG00000039704, gene:ENSEOMG00000042274, gene:ENSEOMG00000050891, gene:ENSEOMG00000051222
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0018340, CQ.Regalona.r1.2AG0020160 ... CQ.Regalona.r1.7AG0002880, CQ.Regalona.r1.7BG0003400, CQ.Regalona.r1.9AG0021180, CQ.Regalona.r1.9BG0002810
Anacardiaceae	Pistacia vera	4	pistato.v30060310, pistato.v30112630, pistato.v30175580 ... pistato.v30260440
Apiaceae	Apium graveolens	2	Ag10G01159, Ag7G01176
Arecaceae	Cocos nucifera	4	COCNU_04G016000, COCNU_08G008510, COCNU_09G003860 ... COCNU_16G007990
Arecaceae	Phoenix dactylifera	5	gene-LOC103703497, gene-LOC103706349, gene-LOC103714060 ... gene-LOC103716485, gene-LOC103721989
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.340.V1.1, AsparagusV1_07.186.V1.1 ... AsparagusV1_08.3523.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G30823, Ftri5G14170, Ftri9G31588
Brassicaceae	Arabidopsis thaliana	2	AT2G21170.1, AT3G55440.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000249m.g.v1.0, Thhalv10010654m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g00320.v2.2, Sp5g07030.v2.2
Brassicaceae	Brassica nigra	5	BniB01g023000.2N, BniB02g016830.2N, BniB06g056790.2N ... BniB06g064890.2N, BniB08g069850.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1119, Ceq07G1654, Ceq08G2169
Casuarinaceae	Casuarina glauca	4	Cgl02G1161, Cgl07G1789, Cgl07G1790, Cgl08G2323
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g09790, gene.Cymno18g00270
Dunaliellaceae	Dunaliella salina	1	Dusal.0384s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g07840, gene.Thate07g13920, gene.Thate08g12900
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3996
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.1736, evm.TU.LG08.262, evm.TU.LG09.1264
Plantaginaceae	Plantago ovata	2	Pov_00001507, Pov_00040117
Plumbaginaceae	Limonium bicolor	5	Lb3G16295, Lb3G16298, Lb7G33336, Lb7G33341, Lb8G35714
Poaceae	Echinochloa crus-galli	9	AH02.3836, AH02.672, AH03.2735, BH02.3849, BH02.675 ... BH03.2879, BH07.4158, CH02.774, CH03.3084
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0009680, gene-QOZ80_1AG0039470 ... gene-QOZ80_1BG0058280, gene-QOZ80_1BG0089500, gene-QOZ80_6AG0528200, gene-QOZ80_6BG0482200
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0230590.1, HORVU.MOREX.r3.5HG0499580.1
Poaceae	Lolium multiflorum	5	gene-QYE76_018031, gene-QYE76_037520, gene-QYE76_048572 ... gene-QYE76_056277, gene-QYE76_062318
Poaceae	Oryza coarctata	5	Oco01G001900, Oco01G024610, Oco02G001890, Oco02G025500 ... Oco18G010390
Poaceae	Oryza sativa	3	LOC_Os01g05490.1, LOC_Os01g62420.1, LOC_Os09g36450.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G255100, gene-BS78_03G065300 ... gene-BS78_03G331800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0205837, Pt_Chr0700034
Poaceae	Sporobolus alterniflorus	11	Chr02G004970, Chr02G023510, Chr03G004300, Chr03G019890 ... Chr05G014390, Chr08G000840, Chr08G022270, Chr10G014150, Chr11G008120, Chr14G010190, Chr21G010340
Poaceae	Thinopyrum elongatum	3	Tel3E01G133200, Tel3E01G575900, Tel5E01G515200
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG008640, gene_TRIDC3AG051670 ... gene_TRIDC3BG011880, gene_TRIDC3BG058380, gene_TRIDC5AG047950, gene_TRIDC5BG051750
Poaceae	Triticum aestivum	8	TraesCS3A02G073300.1, TraesCS3A02G359400.1 ... TraesCS3B02G087400.1, TraesCS3B02G392000.1, TraesCS3D02G073000.1, TraesCS5A02G324200.1, TraesCS5B02G324800.1, TraesCS5D02G331100.1
Poaceae	Zea mays	5	Zm00001eb103580_P001, Zm00001eb124410_P001 ... Zm00001eb319770_P001, Zm00001eb335870_P001, Zm00001eb367890_P001
Poaceae	Zoysia japonica	7	nbis-gene-11451, nbis-gene-13020, nbis-gene-13249 ... nbis-gene-35258, nbis-gene-49551, nbis-gene-49552, nbis-gene-6953
Poaceae	Zoysia macrostachya	4	Zma_g30000, Zma_g32199, Zma_g7601, Zma_g9966
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.884, evm.TU.LG08.1190, evm.TU.LG19.865 ... evm.TU.LG22.946, evm.TU.LG24.862, evm.TU.LG25.448
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g12890, gene.Posoc07g15270
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.248, evm.TU.Scaffold_2_RagTag.126
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14030, nbisL1-mrna-24554, nbisL1-mrna-5085 ... nbisL1-mrna-6008
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10421, nbisL1-mrna-11027, nbisL1-mrna-16903 ... nbisL1-mrna-19651
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16216, nbisL1-mrna-19527, nbisL1-mrna-3358 ... nbisL1-mrna-9383
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1159, evm.TU.utg000016l.160 ... evm.TU.utg000027l.421
Rhizophoraceae	Kandelia obovata	3	Maker00005525, Maker00016822, Maker00018038
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14148, nbisL1-mrna-5566
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11753, nbisL1-mrna-14105, nbisL1-mrna-21122
Salicaceae	Populus euphratica	6	populus_peu02123, populus_peu06437, populus_peu08761 ... populus_peu20279, populus_peu35671, populus_peu36595
Solanaceae	Lycium barbarum	4	gene-LOC132599285, gene-LOC132605872, gene-LOC132606616 ... gene-LOC132614384
Solanaceae	Solanum chilense	4	SOLCI003901100, SOLCI004472500, SOLCI005290200 ... SOLCI007478500
Solanaceae	Solanum pennellii	4	gene-LOC107002393, gene-LOC107007743, gene-LOC107017928 ... gene-LOC107021278
Tamaricaceae	Reaumuria soongarica	3	gene_11393, gene_11790, gene_8368
Tamaricaceae	Tamarix chinensis	4	TC05G1764, TC08G0768, TC11G2132, TC12G0709
Zosteraceae	Zostera marina	4	Zosma02g18770.v3.1, Zosma03g20670.v3.1, Zosma06g14860.v3.1 ... Zosma06g29310.v3.1