halophFGD

Basic Information

Locus ID: Ag10G01144

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Very-long-chain enoyl-CoA

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	161999728	162002938	+	Ag10G01144

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.66	36,091.61 Da	44.29	90.48	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01801	Ubl_TECR_like	2	86	9.1588E-21	-
Pfam	PF02544	3-oxo-5-alpha-steroid 4-dehydrogenase	159	308	1.0E-29	IPR001104
SUPERFAMILY	SSF54236	Ubiquitin-like	1	84	1.11E-5	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	86	1.2E-6	-
ProSiteProfiles	PS50244	Steroid 5-alpha reductase C-terminal domain profile.	199	279	24.399256	IPR001104
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	88	8.611381	IPR000626

Gene Ontology

Biological Process:

GO:0006629 (lipid metabolic process)

Molecular Function:

GO:0005515 (protein binding) GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)

KEGG Pathway

KO Term:

K10258 (very-long-chain enoyl-CoA reductase [EC:1.3.1.93])

Pathway:

ko00062 (Fatty acid elongation) map00062 (Fatty acid elongation) ko01040 (Biosynthesis of unsaturated fatty acids) map01040 (Biosynthesis of unsaturated fatty acids) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01212 (Fatty acid metabolism) map01212 (Fatty acid metabolism)

Module:

M00415 (Fatty acid elongation in endoplasmic reticulum)

Reaction:

R07761 ((2E)-Octadecenoyl-CoA + NADPH + H+ <=> Stearoyl-CoA + NADP+) R09449 (trans-2,3-Dehydroacyl-CoA + NADPH + H+ <=> Long-chain acyl-CoA + NADP+) R10828 (Very-long-chain acyl-CoA + NADP+ <=> Very-long-chain trans-2,3-dehydroacyl-CoA + NADPH + H+)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G55360.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein. Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport.
RefSeq	XP_017237509.1	PREDICTED: very-long-chain enoyl-CoA reductase [Daucus carota subsp. sativus]
Swiss-Prot	Q9M2U2	Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 SV=1
TrEMBL	A0A161Y1C3	S5A_REDUCTASE domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011693 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	44.529823	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	45.199566	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	65.305779	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	62.590134	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	59.768959	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	48.523106	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	42.329277	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	34.481552	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	95.581879	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	90.453224	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	92.055031	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	115.551529	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	116.635262	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	120.320854	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	291.218536	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	316.264771	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	229.15657	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	114.4534	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	138.252899	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	96.855904	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	76.049088	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	73.694725	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	76.944206	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	75.100647	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	79.789955	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	102.088333	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	125.348076	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	79.603935	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	143.932114	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	73.667961		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	81.265762		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	82.512733		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	69.270363		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	65.51738		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	63.895744		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	59.550526		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	84.521637		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	66.978355		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	82.354561	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	55.927975	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	46.622311	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	25.043077	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	38.541115	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	57.605362	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	53.74987	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	28.998522	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	63.394459	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	72.686493	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	51.954464	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	62.84676	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg9918
Aizoaceae	Mesembryanthemum crystallinum	1	gene_16572
Amaranthaceae	Atriplex hortensis	1	Ah035410
Amaranthaceae	Beta vulgaris	1	BVRB_2g024650
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg21182, Sbi_jg21183, Sbi_jg22622
Amaranthaceae	Salicornia europaea	1	Seu_jg16510
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00016300
Amaranthaceae	Suaeda glauca	2	Sgl62596, Sgl67142
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000019896, gene:ENSEOMG00000021554 ... gene:ENSEOMG00000051407
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1BG0018220, CQ.Regalona.r1.2AG0020030
Apiaceae	Apium graveolens	1	Ag10G01144
Arecaceae	Cocos nucifera	2	COCNU_04G015260, COCNU_12G007740
Arecaceae	Phoenix dactylifera	2	gene-LOC103696797, gene-LOC103703465
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.3483.V1.1
Asteraceae	Flaveria trinervia	1	Ftri6G08988
Brassicaceae	Arabidopsis thaliana	1	AT3G55360.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10010564m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g07110.v2.2
Brassicaceae	Brassica nigra	1	BniB08g069740.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G1112
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g07420, gene.Cymno18g00290
Dunaliellaceae	Dunaliella salina	1	Dusal.0084s00018.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g00880, gene.Thate08g12850
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.1623
Plantaginaceae	Plantago ovata	1	Pov_00040112
Plumbaginaceae	Limonium bicolor	2	Lb7G33696, Lb7G33783
Poaceae	Echinochloa crus-galli	3	AH02.665, BH02.671, CH02.767
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0009730, gene-QOZ80_1BG0058340
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0230880.1
Poaceae	Lolium multiflorum	1	gene-QYE76_018646
Poaceae	Oryza coarctata	2	Oco01G001940, Oco02G001940
Poaceae	Oryza sativa	1	LOC_Os01g05670.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G064200, gene-BS78_03G064600
Poaceae	Sporobolus alterniflorus	3	Chr02G023480, Chr03G004330, Chr08G000810
Poaceae	Thinopyrum elongatum	1	Tel3E01G136400
Poaceae	Triticum dicoccoides	3	gene_TRIDC2BG064920, gene_TRIDC3AG008900 ... gene_TRIDC3BG012710
Poaceae	Triticum aestivum	3	TraesCS3A02G074900.1, TraesCS3D02G074700.1 ... TraesCSU02G049100.1
Poaceae	Zea mays	1	Zm00001eb335900_P001
Poaceae	Zoysia japonica	2	nbis-gene-13028, nbis-gene-6949
Poaceae	Zoysia macrostachya	2	Zma_g7605, Zma_g9969
Portulacaceae	Portulaca oleracea	1	evm.TU.LG05.867
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g15020
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.400, evm.TU.Scaffold_4_RagTag.1725
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14025, nbisL1-mrna-26012
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-2571, nbisL1-mrna-7654
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14181, nbisL1-mrna-4530
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000005l.113, evm.TU.utg000008l.960
Rhizophoraceae	Kandelia obovata	2	Maker00001518, Maker00010059
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-17543, nbisL1-mrna-2093, nbisL1-mrna-493
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19536, nbisL1-mrna-9460
Salicaceae	Populus euphratica	2	populus_peu06427, populus_peu20268
Solanaceae	Lycium barbarum	1	gene-LOC132640202
Solanaceae	Solanum chilense	1	SOLCI001058000
Solanaceae	Solanum pennellii	1	gene-LOC107020319
Tamaricaceae	Reaumuria soongarica	1	STRG.14934_chr08_+
Tamaricaceae	Tamarix chinensis	2	TC05G1770, TC08G0755
Zosteraceae	Zostera marina	2	Zosma06g14880.v3.1, Zosma1315g00010.v3.1