Basic Information
Locus ID:
Ag10G01055
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription initiation factor TFIID subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 158380732 | 158396484 | + | Ag10G01055 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 73,725.44 Da | 51.25 | 80.74 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08044 | TAF5_NTD2 | 54 | 186 | 8.96753E-55 | IPR007582 |
| CDD | cd00200 | WD40 | 336 | 653 | 3.83084E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 482 | 519 | 9.4E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 403 | 435 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 367 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 442 | 477 | 4.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 523 | 561 | 3.0E-9 | IPR001680 |
| Pfam | PF04494 | WD40 associated region in TFIID subunit, NTD2 domain | 53 | 180 | 8.8E-45 | IPR007582 |
| Pfam | PF00400 | WD domain, G-beta repeat | 565 | 603 | 5.1E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 329 | 653 | 2.86E-78 | IPR036322 |
| SUPERFAMILY | SSF160897 | Taf5 N-terminal domain-like | 42 | 185 | 2.35E-51 | IPR037264 |
| Gene3D | G3DSA:2.130.10.10 | - | 563 | 654 | 3.6E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 482 | 1.2E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 483 | 562 | 1.4E-30 | IPR015943 |
| Gene3D | G3DSA:1.25.40.500 | TFIID subunit TAF5, NTD2 domain | 34 | 185 | 9.2E-52 | IPR037264 |
| SMART | SM00320 | WD40_4 | 564 | 603 | 4.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 435 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 480 | 519 | 8.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 522 | 561 | 3.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 367 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 438 | 477 | 2.9E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 335 | 368 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 445 | 479 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 571 | 612 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 2 | 34 | 7.906042 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 487 | 528 | 16.991583 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 529 | 566 | 13.2374 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 445 | 486 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 529 | 570 | 16.924746 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 571 | 606 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 487 | 524 | 13.079218 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 435 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 403 | 435 | 12.420132 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 590 | 604 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 506 | 520 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 548 | 562 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 354 | 368 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 590 | 604 | 3.4E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 422 | 436 | 3.4E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 506 | 520 | 3.4E-9 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 273 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25150.2 | - | 0 |
| RefSeq | XP_017248560.1 | PREDICTED: transcription initiation factor TFIID subunit 5 [Daucus carota subsp. sativus] | 0 |
| Q6S7B0 | Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana OX=3702 GN=TAF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165WD41 | LisH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015265 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.086227 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.128696 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.229626 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.263103 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.811663 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.391361 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.600984 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.312675 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.446072 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 39.562969 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 41.674133 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.650406 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.124504 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.182608 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.725864 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.633639 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.023254 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.159676 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.769987 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.033196 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.284772 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.692953 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.084187 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.259735 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.207346 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.776453 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.713593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.651278 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.177666 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.729985 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.331924 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.31716 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.300929 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.963392 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.874372 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.836886 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.663793 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.41479 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.453926 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.670751 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.151327 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.987479 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.589138 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.126637 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 35.313038 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.401767 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.286642 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.311562 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.51334 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.681559 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13432, jg27098 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23143 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029048 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg29081, Sbi_jg29082, Sbi_jg3301 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6635 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000114 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11470, Sgl16870 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013266, gene:ENSEOMG00000036237 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007940, CQ.Regalona.r1.2BG0021580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250890 |
| Apiaceae | Apium graveolens | 1 | Ag10G01055 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005360 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707790 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3372.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003767m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g003770.2N, BniB07g039910.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2419 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2622 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g07040, gene.Cymno06g07690 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0816s00002.v1.0, Dusal.0816s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g17620, gene.Thate04g09640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-321 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1520 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020029 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14319, Lb2G14320, Lb7G34568 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.1235, AH06.2467, BH05.1419, CH05.1589 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0546510, gene-QOZ80_6BG0499880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0743140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062843 |
| Poaceae | Oryza coarctata | 4 | Oco11G013980, Oco12G014150, Oco13G003570, Oco14G003960 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g44030.1, LOC_Os07g10520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G040000, gene-BS78_10G208600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0401514, Pt_Chr0701362, Pt_Chr0701372, Pt_Chr0701399 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G030980, Chr05G008700, Chr0G000150, Chr0G007670 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G791300, Tel7E01G871900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG047050, gene_TRIDC5BG050880 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G317800.1, TraesCS5B02G318400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb239900_P001, Zm00001eb259920_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40884, nbis-gene-9900 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30902, Zma_g33155 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.463, evm.TU.LG15.1001, evm.TU.LG17.463 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12860 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.899, evm.TU.Scaffold_4_RagTag.1444 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22766 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16709, nbisL1-mrna-974 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4285, nbisL1-mrna-9151 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.782 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001337, Maker00004227 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2267, nbisL1-mrna-3736, nbisL1-mrna-3737 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7811, nbisL1-mrna-9711 |
| Salicaceae | Populus euphratica | 2 | populus_peu04695, populus_peu12996 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643797 |
| Solanaceae | Solanum chilense | 1 | SOLCI006785700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023774 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13836 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3596 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06410.v3.1 |