halophFGD

Basic Information

Locus ID: Ag10G01049

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Glutelin type-A

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	158164052	158172002	-	Ag10G01049

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.13	36,572.42 Da	18.40	94.25	0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02242	cupin_11S_legumin_N	4	172	6.11321E-66	-
CDD	cd02243	cupin_11S_legumin_C	198	334	3.82031E-66	-
Pfam	PF00190	Cupin	196	334	3.9E-20	IPR006045
Pfam	PF00190	Cupin	10	156	5.2E-30	IPR006045
SUPERFAMILY	SSF51182	RmlC-like cupins	16	334	6.99E-47	IPR011051
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	4	188	3.0E-34	IPR014710
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	195	336	6.1E-44	IPR014710
SMART	SM00835	Cupin_1_3	195	339	6.2E-10	IPR006045
SMART	SM00835	Cupin_1_3	3	157	4.3E-31	IPR006045
PRINTS	PR00439	11-S seed storage protein family signature	316	333	8.8E-12	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	258	274	8.8E-12	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	276	291	8.8E-12	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	211	231	8.8E-12	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	294	312	8.8E-12	IPR006044

Gene Ontology

Molecular Function:

GO:0045735 (nutrient reservoir activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G07750.1	RmlC-like cupins superfamily protein.
RefSeq	XP_017246383.1	PREDICTED: 11S globulin subunit beta-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8GZP6	11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1
TrEMBL	A0A165WCC5	11S globulin OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015274 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.202301	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.061787	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.449832	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.773564	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.325981	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.194286	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	33.83918	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	36.925713	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.337646	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.418234	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.527323	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.425668	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.607556	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.191128	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.10556		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.016823		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.046167		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.549241		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	28.599903		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.752347		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.584673		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.933677		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.807685		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.290113	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.13554	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.03755	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.093298	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	38.600273	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.276773	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.438814	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg27790, jg35797, jg8320, jg9306, jg9307
Aizoaceae	Mesembryanthemum crystallinum	2	gene_20262, gene_7039
Amaranthaceae	Atriplex hortensis	5	Ah000823, Ah000824, Ah019434, Ah028102, Ah031039
Amaranthaceae	Beta vulgaris	4	BVRB_5g114420, BVRB_7g159780, BVRB_7g174610, BVRB_7g174620
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg24244, Sbi_jg24255, Sbi_jg27353, Sbi_jg27521 ... Sbi_jg31101, Sbi_jg32126, Sbi_jg33048, Sbi_jg33049, Sbi_jg33098, Sbi_jg8069, Sbi_jg8082, Sbi_jg8084
Amaranthaceae	Salicornia europaea	8	Seu_jg11940, Seu_jg11953, Seu_jg24990, Seu_jg24991 ... Seu_jg25789, Seu_jg25790, Seu_jg7821, Seu_jg7850
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00004650, GOSA_00004651, GOSA_00004652, GOSA_00004653 ... GOSA_00012234, GOSA_00023600
Amaranthaceae	Suaeda glauca	7	Sgl24738, Sgl29889, Sgl34918, Sgl40317, Sgl54719, Sgl71468 ... Sgl75054
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000007073, gene:ENSEOMG00000007510 ... gene:ENSEOMG00000013140, gene:ENSEOMG00000021325, gene:ENSEOMG00000031676, gene:ENSEOMG00000036572, gene:ENSEOMG00000038097, gene:ENSEOMG00000040166, gene:ENSEOMG00000043874, gene:ENSEOMG00000048419
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1BG0003320, CQ.Regalona.r1.3AG0010140 ... CQ.Regalona.r1.3BG0010270, CQ.Regalona.r1.5AG0020410, CQ.Regalona.r1.5BG0021830, CQ.Regalona.r1.7AG0002170, CQ.Regalona.r1.7AG0020230, CQ.Regalona.r1.7BG0022800, CQ.Regalona.r1.9BG0003520
Anacardiaceae	Pistacia vera	1	pistato.v30059740
Apiaceae	Apium graveolens	4	Ag10G01049, Ag1G00051, AgUnG01170, AgUnG01171
Arecaceae	Cocos nucifera	2	COCNU_04G014920, scaffold011975G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103710574, gene-LOC103718026
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.1045.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G29425, Ftri14G13482, Ftri14G27146
Brassicaceae	Arabidopsis thaliana	2	AT1G07750.1, AT2G28680.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008034m.g.v1.0, Thhalv10016860m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02870.v2.2, Sp4g11550.v2.2
Brassicaceae	Brassica nigra	5	BniB01g015210.2N, BniB02g003750.2N, BniB03g002370.2N ... BniB06g017830.2N, BniB06g042950.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq07G1576, Ceq08G2268, Ceq08G2269, Ceq08G2288
Casuarinaceae	Casuarina glauca	9	Cgl07G1674, Cgl07G1676, Cgl07G1683, Cgl07G1687, Cgl07G1691 ... Cgl07G1692, Cgl08G2446, Cgl08G2447, Cgl08G2460
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g15640
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g33550, gene.Thate02g38740
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG08.737, evm.TU.LG08.738, evm.TU.LG09.1341
Plantaginaceae	Plantago ovata	3	Pov_00027084, Pov_00039974, Pov_00039975
Plumbaginaceae	Limonium bicolor	3	Lb2G13921, Lb8G36507, Lb8G36508
Poaceae	Echinochloa crus-galli	8	AH03.3887, AH04.515, AH05.965, BH03.4174, BH04.559, BH05.832 ... CH05.956, CH07.329
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0407480, gene-QOZ80_5BG0455770 ... gene-QOZ80_6AG0538920, gene-QOZ80_6BG0492240
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0008450.1, HORVU.MOREX.r3.3HG0328330.1 ... HORVU.MOREX.r3.3HG0329530.1, HORVU.MOREX.r3.3HG0329560.1, HORVU.MOREX.r3.7HG0748960.1, HORVU.MOREX.r3.7HG0748980.1
Poaceae	Lolium multiflorum	13	gene-QYE76_008915, gene-QYE76_008917, gene-QYE76_029140 ... gene-QYE76_030581, gene-QYE76_030582, gene-QYE76_057190, gene-QYE76_058470, gene-QYE76_058474, gene-QYE76_058476, gene-QYE76_058888, gene-QYE76_058898, gene-QYE76_062409, gene-QYE76_062900
Poaceae	Oryza coarctata	5	Oco01G031310, Oco02G032460, Oco09G000830, Oco10G000910 ... Oco17G011360
Poaceae	Oryza sativa	2	LOC_Os01g74480.1, LOC_Os05g02520.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G089700, gene-BS78_09G017700
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0105013, Pt_Chr0105019, Pt_Chr0108089, Pt_Chr0502227 ... Pt_Chr0502228, Pt_Chr0503647, Pt_Chr0503648, Pt_Chr0605857
Poaceae	Sporobolus alterniflorus	7	Chr01G013430, Chr01G013490, Chr06G004630, Chr10G007810 ... Chr12G023260, Chr12G023340, Chr15G006110
Poaceae	Thinopyrum elongatum	5	Tel1E01G096600, Tel1E01G601500, Tel3E01G887600 ... Tel3E01G897700, Tel7E01G951400
Poaceae	Triticum dicoccoides	14	gene_TRIDC1AG005310, gene_TRIDC1AG054290 ... gene_TRIDC1BG007350, gene_TRIDC1BG062090, gene_TRIDC3AG074430, gene_TRIDC3AG074470, gene_TRIDC3AG075210, gene_TRIDC3AG075220, gene_TRIDC3AG075240, gene_TRIDC3BG085750, gene_TRIDC3BG086580, gene_TRIDC3BG086610, gene_TRIDC7AG075990, gene_TRIDC7BG072680
Poaceae	Triticum aestivum	19	TraesCS1A02G045800.1, TraesCS1A02G369500.1 ... TraesCS1B02G059000.1, TraesCS1B02G388000.1.cds1, TraesCS1D02G046400.1, TraesCS1D02G375400.1, TraesCS3A02G526200.1.cds1, TraesCS3A02G526500.1, TraesCS3A02G531000.1, TraesCS3A02G531100.1, TraesCS3B02G593800.1, TraesCS3B02G601300.1, TraesCS3B02G601500.1, TraesCS3D02G531600.1, TraesCS3D02G536500.1, TraesCS7A02G545400.1, TraesCS7A02G545600.1, TraesCS7B02G468800.1, TraesCS7D02G531900.1
Poaceae	Zea mays	4	Zm00001eb132730_P001, Zm00001eb266290_P001 ... Zm00001eb355570_P001, Zm00001eb401380_P001
Poaceae	Zoysia japonica	4	nbis-gene-18340, nbis-gene-30499, nbis-gene-39261 ... nbis-gene-54062
Poaceae	Zoysia macrostachya	2	Zma_g27593, Zma_g30510
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.2280, evm.TU.LG03.2269, evm.TU.LG06.1098 ... evm.TU.LG11.416, evm.TU.LG14.1455, evm.TU.LG17.1315, evm.TU.LG18.170, evm.TU.LG26.899
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g34840, gene.Posoc10g01130
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_13_RagTag.803
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-15408, nbisL1-mrna-15409, nbisL1-mrna-15410 ... nbisL1-mrna-15411, nbisL1-mrna-15413, nbisL1-mrna-30231, nbisL1-mrna-30234
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000015l.466
Rhizophoraceae	Kandelia obovata	1	Maker00015895
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4385
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15004
Salicaceae	Populus euphratica	14	populus_peu00491, populus_peu00492, populus_peu00493 ... populus_peu00494, populus_peu00497, populus_peu00498, populus_peu00499, populus_peu00500, populus_peu00501, populus_peu00502, populus_peu00503, populus_peu06139, populus_peu06871, populus_peu23364
Solanaceae	Lycium barbarum	5	gene-LOC132598697, gene-LOC132599488, gene-LOC132643519 ... gene-LOC132643520, gene-LOC132643932
Solanaceae	Solanum chilense	5	SOLCI001725100, SOLCI001725200, SOLCI001749400 ... SOLCI002908300, SOLCI003037200
Solanaceae	Solanum pennellii	5	gene-LOC107003226, gene-LOC107004324, gene-LOC107006653 ... gene-LOC107027773, gene-LOC107028782
Tamaricaceae	Reaumuria soongarica	1	STRG.19490_chr07_-
Tamaricaceae	Tamarix chinensis	3	TC04G0189, TC04G0196, TC11G2248
Zosteraceae	Zostera marina	1	Zosma02g21280.v3.1