halophFGD

Basic Information

Locus ID: Ag10G01033

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: DNA recombination

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	157248581	157250184	-	Ag10G01033

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.44	37,197.36 Da	41.42	85.36	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04476	RPA1_DBD_C	113	226	3.9045E-22	IPR013955
Pfam	PF08646	Replication factor-A C terminal domain	115	229	1.6E-11	IPR013955
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	93	235	1.4E-23	IPR012340
Gene3D	G3DSA:2.40.50.140	-	87	260	6.5E-29	-
MobiDBLite	mobidb-lite	consensus disorder prediction	259	285	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	259	282	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017239612.1	PREDICTED: uncharacterized protein LOC108212396 [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5B9L1	Rep_fac-A_C domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_008303 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.606426	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.427755	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.806403	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.657353	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.962856	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.938563	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	9.316392	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.556969	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	33.653446	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	30.087887	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	28.147388	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	27.870651	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	30.315889	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	25.07313	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.623971	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.256563	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.063063	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.891171	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.90551	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.597587	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.27758	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.945255	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.21553	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.192499	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	20.276283	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.168496	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.717931	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.915662	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.416048	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	24.446899		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	16.336258		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	14.726667		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.161183		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	18.558716		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.867552		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	13.364476		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	15.698777		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.683717		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.102596	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.028502	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	22.472212	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.149088	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	22.191797	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	29.17988	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.992781	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	21.070932	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	25.505091	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	24.336189	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	26.065228	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	26.144341	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11242, gene_19988, gene_9588
Amaranthaceae	Atriplex hortensis	13	Ah001361, Ah001371, Ah002563, Ah006984, Ah006985, Ah007876 ... Ah010862, Ah025226, Ah029290, Ah030577, Ah037589, Ah038029, Ah038313
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg149, Sbi_jg150, Sbi_jg16705, Sbi_jg3120, Sbi_jg33012 ... Sbi_jg34953, Sbi_jg39132, Sbi_jg40907, Sbi_jg40945, Sbi_jg4372, Sbi_jg52704, Sbi_jg52799, Sbi_jg56535, Sbi_jg59927, Sbi_jg6013, Sbi_jg6051, Sbi_jg6079, Sbi_jg6080, Sbi_jg62897
Amaranthaceae	Salicornia europaea	16	Seu_jg10453, Seu_jg17430, Seu_jg17914, Seu_jg1932 ... Seu_jg19683, Seu_jg20729, Seu_jg21730, Seu_jg23726, Seu_jg24231, Seu_jg24232, Seu_jg25610, Seu_jg26476, Seu_jg28167, Seu_jg3128, Seu_jg5300, Seu_jg6452
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00024462
Amaranthaceae	Suaeda glauca	10	Sgl03380, Sgl08498, Sgl31135, Sgl31147, Sgl32416, Sgl36490 ... Sgl37710, Sgl44281, Sgl49042, Sgl74206
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005026, gene:ENSEOMG00000015694 ... gene:ENSEOMG00000015873, gene:ENSEOMG00000034435
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0003620, CQ.Regalona.r1.8BG0010240
Apiaceae	Apium graveolens	27	Ag10G01033, Ag10G01574, Ag10G01896, Ag11G03153, Ag11G04618 ... Ag1G01595, Ag1G01599, Ag2G00391, Ag2G01149, Ag2G01625, Ag3G01857, Ag3G01971, Ag3G02116, Ag3G02639, Ag3G02752, Ag4G02157, Ag5G01058, Ag5G01367, Ag6G02577, Ag7G00861, Ag7G00882, Ag9G01197, Ag9G02116, Ag9G02235, AgUnG00818, AgUnG01095, AgUnG01450
Arecaceae	Cocos nucifera	2	COCNU_13G005920, scaffold010294G000060
Poaceae	Echinochloa crus-galli	7	AH01.5146, BH01.1939, BH02.822, BH09.2202, BH09.2414 ... CH01.2160, CH02.811
Poaceae	Oryza coarctata	1	Oco15G006230
Poaceae	Oryza sativa	8	LOC_Os05g02080.1, LOC_Os11g01460.1, LOC_Os11g38310.1 ... LOC_Os11g41180.1, LOC_Os11g44840.1, LOC_Os11g47400.1, LOC_Os12g26670.1, LOC_Os12g38520.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G191500, gene-BS78_05G005400 ... gene-BS78_05G239400, gene-BS78_05G271300, gene-BS78_05G282000
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0201723, Pt_Chr0201724, Pt_Chr0201726, Pt_Chr0201806 ... Pt_Chr0501697, Pt_Chr0501742, Pt_Chr0602034
Poaceae	Sporobolus alterniflorus	2	Chr19G015510, Chr27G003730
Poaceae	Thinopyrum elongatum	10	Tel1E01G147700, Tel1E01G147800, Tel1E01G242200 ... Tel1E01G245800, Tel1E01G253400, Tel2E01G486300, Tel4E01G387800, Tel6E01G338100, Tel7E01G398200, Telscf1201G000300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1BG023090, gene_TRIDC2AG046570 ... gene_TRIDC3AG028860, gene_TRIDC5BG032950, gene_TRIDC6BG030650, gene_TRIDC7BG033130
Solanaceae	Lycium barbarum	3	gene-LOC132600651, gene-LOC132619582, gene-LOC132621884
Solanaceae	Solanum chilense	7	SOLCI000818800, SOLCI000928800, SOLCI004930500 ... SOLCI004985800, SOLCI005662500, SOLCI006437700, SOLCI007519000
Solanaceae	Solanum pennellii	6	gene-LOC107003768, gene-LOC107019434, gene-LOC107019527 ... gene-LOC107020428, gene-LOC107024868, gene-LOC114077490