Basic Information
Locus ID:
Ag10G00998
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 155126487 | 155132185 | - | Ag10G00998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.12 | 60,435.96 Da | 73.55 | 58.90 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 312 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08670.1 | 0 | |
| RefSeq | XP_017247999.1 | PREDICTED: sialidase [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165WA09 | Flocculation protein FLO11-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.336745 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.047667 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.412897 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.328916 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.718099 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.496514 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.312906 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.315915 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.6863 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.979942 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.381798 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.291819 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.996817 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.633352 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 37.155701 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 44.056316 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 40.419659 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.370731 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 35.851128 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.639492 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 33.868633 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.868786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.149038 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.755627 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.372263 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.216522 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 58.61097 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 27.419743 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.193352 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.99016 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.754007 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.668004 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.319543 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.531085 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.172617 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.90118 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.272487 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.626267 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 30.32711 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.500301 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.6825 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.351007 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.565751 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.792339 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.404041 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.625638 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.154765 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.164124 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.114754 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.317701 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14679, jg14681, jg3149 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14602 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031572 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2117, Sbi_jg34393 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2651 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005848 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12791, Sgl74724 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009449, gene:ENSEOMG00000034192 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0019760, CQ.Regalona.r1.7AG0023280 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30269440 |
| Apiaceae | Apium graveolens | 1 | Ag10G00998 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G004770, COCNU_04G012300, COCNU_16G005590 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702157, gene-LOC103716682, gene-LOC103722179 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3310.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G11159, Ftri9G01505 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020404m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07110.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g055870.2N, BniB07g024600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0868 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0886 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11750, gene.Cymno05g12820 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g10680, gene.Thate01g29720, gene.Thate02g15750 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12526, nbisL1-mrna-12527, nbisL1-mrna-5362 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.844 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002584 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25636 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.3684, AH05.2013, BH02.3264, BH05.2152, CH02.3970 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0087910, gene-QOZ80_5AG0369200 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G023350, Oco02G024110, Oco09G012350, Oco10G012470 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G317200, gene-BS78_09G182700 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0504553, Pt_Chr0504561, Pt_Chr0601795, Pt_Chr0601805 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G018370, Chr02G006300, Chr03G018820, Chr05G027080 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G488800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG044810, gene_TRIDC3AG049330 ... |
| Poaceae | Zea mays | 4 | Zm00001eb149660_P003, Zm00001eb290760_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11587, nbis-gene-14260, nbis-gene-25366 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g26992, Zma_g28450, Zma_g8884 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1532, evm.TU.LG26.131 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60379.3, evm.TU.60380.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5700 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9483 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3599 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.320 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016839 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4882 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13866 |
| Salicaceae | Populus euphratica | 2 | populus_peu11532, populus_peu25238 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631179 |
| Solanaceae | Solanum chilense | 1 | SOLCI000092400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031771 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1624_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2349, TC07G0954 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29160.v3.1 |