Basic Information
Locus ID:
Ag10G00972
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
RAPTOR1
Description:
Regulatory-associated protein of TOR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 153699003 | 153712470 | - | Ag10G00972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 147,400.75 Da | 46.93 | 90.63 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14538 | Raptor N-terminal CASPase like domain | 98 | 249 | 8.6E-67 | IPR029347 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1068 | 1107 | 0.032 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1024 | 1337 | 9.58E-40 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 433 | 848 | 7.97E-33 | IPR016024 |
| Gene3D | G3DSA:2.130.10.10 | - | 1173 | 1340 | 1.1E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 984 | 1171 | 2.7E-14 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 459 | 741 | 1.1E-23 | IPR011989 |
| SMART | SM00320 | WD40_4 | 1163 | 1204 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1208 | 1249 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1020 | 1060 | 33.0 | IPR001680 |
| SMART | SM01302 | Raptor_N_2 | 97 | 250 | 5.2E-95 | IPR029347 |
| SMART | SM00320 | WD40_4 | 1253 | 1292 | 0.051 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1302 | 1339 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1063 | 1107 | 0.44 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1090 | 1107 | 8.870959 | IPR001680 |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 467 | 488 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 187 | 212 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 514 | 530 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 1188 | 1206 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 140 | 159 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 360 | 384 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 287 | 307 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 436 | 466 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 490 | 509 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 325 | 352 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 161 | 182 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 96 | 117 | 7.1E-160 | - |
| PRINTS | PR01547 | Saccharomyces cerevisiae 175.8kDa hypothetical protein signature | 214 | 238 | 7.1E-160 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 804 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08850.1 | HEAT repeat ;WD domain, G-beta repeat protein protein. Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. | 0 |
| RefSeq | XP_017247003.1 | PREDICTED: LOW QUALITY PROTEIN: regulatory-associated protein of TOR 1-like [Daucus carota subsp. sativus] | 0 |
| Q93YQ1 | Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana OX=3702 GN=RAPTOR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ACD5 | Raptor_N domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.730549 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.315815 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.888107 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.671469 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.320183 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.39481 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.345009 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 21.65843 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 43.095085 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.979 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 46.880432 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.183212 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.990623 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.202805 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.444796 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.469954 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.876987 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.098024 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.433559 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.345293 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.227592 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.172794 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.945164 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.30361 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.145512 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 33.585648 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.492842 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 26.511742 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.567671 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.495466 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.082814 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.284181 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.957277 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.464372 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.789753 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.640759 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.370278 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.553467 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 26.600132 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.478039 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.512912 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.017094 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.68947 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 32.425266 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.091379 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.637321 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.900635 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.563078 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.084059 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.934998 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14720, jg3198 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14560 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031418 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g157690, BVRB_7g157970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2242, Sbi_jg34265 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2513 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005961 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71025, Sgl74616 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000035490, gene:ENSEOMG00000039698 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0022190, CQ.Regalona.r1.7AG0022780 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30268250 |
| Apiaceae | Apium graveolens | 2 | Ag10G00972, Ag5G02810 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G004100, COCNU_12G006510 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708869, gene-LOC103714392 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.299.V1.1, AsparagusV1_07.1072.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G16525, Ftri9G05039 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G08850.1, AT5G01770.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012449m.g.v1.0, Thhalv10019904m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07250.v2.2, Sp6g41030.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g054320.2N, BniB01g055740.2N, BniB07g024560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0928 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0946 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g14630 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0279s00012.v1.0, Dusal.0279s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g03290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11969, nbisL1-mrna-4303 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.915 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006958 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09603 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.53, AH05.58, BH04.60, CH02.2102, CH02.2472, CH04.161 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0378880, gene-QOZ80_5BG0426010 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003616 |
| Poaceae | Oryza coarctata | 2 | Oco22G000290, Ocoptg000061lG000460 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g01872.1, LOC_Os12g01922.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G009700, gene-BS78_08G003000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101003, Pt_Chr0702866, Pt_Chr0702885 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G022300, Chr17G007270, Chr19G011540, Chr27G004520 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G259600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG025000, gene_TRIDC5BG026250 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G149200.2, TraesCS5B02G147900.4 ... |
| Poaceae | Zea mays | 3 | Zm00001eb093980_P001, Zm00001eb195140_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40095, nbis-gene-57149 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g17510, Zma_g24612, Zma_g25443 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.2126, evm.TU.LG07.915, evm.TU.LG14.418 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g33950, gene.Posoc01g33960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1891 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5656 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1336, nbisL1-mrna-1337 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3638, nbisL1-mrna-3639 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000016l.744, evm.TU.utg000016l.745 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017315 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4909 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13825 |
| Salicaceae | Populus euphratica | 3 | populus_peu11492, populus_peu25305, populus_peu25329 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606757, gene-LOC132631363 |
| Solanaceae | Solanum chilense | 2 | SOLCI004127600, SOLCI004935400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001588, gene-LOC107031079 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_5716, gene_7476 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2387, TC07G1044 |
| Zosteraceae | Zostera marina | 1 | Zosma01g19160.v3.1 |