Basic Information
Locus ID:
Ag10G00891
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Peptidase S24 S26A S26B S26C family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 148200673 | 148213314 | - | Ag10G00891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 15,056.05 Da | 38.56 | 86.49 | -0.23 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31140.1 | Peptidase S24/S26A/S26B/S26C family protein. | 0 |
| RefSeq | XP_017238093.1 | PREDICTED: uncharacterized protein LOC108211098 [Daucus carota subsp. sativus] | 0 |
| Q84VZ6 | Mitochondrial ATP-independent inner membrane protease subunit 2 OS=Arabidopsis thaliana OX=3702 GN=IMP1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A161XJ73 | Mitochondrial inner membrane protease subunit 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 43.08036 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 27.687935 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.062042 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.580156 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.400629 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.258585 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.745602 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.642306 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 79.382492 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 80.768616 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 80.479744 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 89.466782 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 83.779388 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 85.491066 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 30.850838 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.041183 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 39.443787 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 34.049458 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 27.915028 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.694433 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.903038 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 47.840134 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 59.493488 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 55.988594 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 62.877182 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 43.154682 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 48.432964 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 34.612324 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 51.19656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.785528 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.002793 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.399466 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.627621 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 48.554798 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.423891 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.582893 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.111461 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.511897 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 35.142361 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.11253 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.422747 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 40.304264 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 36.887535 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 51.387852 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 42.506939 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 50.058456 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 56.880814 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 94.301796 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 77.238754 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 78.210999 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16195, jg35423, jg37814, jg8693 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_19290, gene_2744, gene_3029, gene_3030 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000149, Ah018340, Ah018341 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g048940, BVRB_3g048960, BVRB_5g121430 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg31384, Sbi_jg37832, Sbi_jg57883, Sbi_jg5978 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25515, Seu_jg28141 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00006111, GOSA_00006112, GOSA_00026720 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl00978, Sgl00980, Sgl05933, Sgl06037, Sgl06045, Sgl06053 ... |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000001160, gene:ENSEOMG00000003538 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0008110, CQ.Regalona.r1.3AG0008120 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016300 |
| Apiaceae | Apium graveolens | 2 | Ag10G00891, Ag2G01326 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011910 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721924, gene-LOC120104375 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.812.V1.1, AsparagusV1_Unassigned.74.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G33140 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G06200.1, AT2G31140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008791m.g.v1.0, Thhalv10017243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g05010.v2.2, Sp4g13620.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g012930.2N, BniB01g012940.2N, BniB03g001740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1328 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1395 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07500 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0116s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g24340, gene.Thate08g00260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9713 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1355 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024622 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10276, Lb2G11663 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.24, BH09.98, CH09.66 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0319820, gene-QOZ80_4BG0351230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0100860.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G001160, Oco08G000080 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g01240.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G313500, gene-BS78_06G003400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305972 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G019240, Chr25G016870, Chr26G000720, Chr30G014510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G102400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG004400, gene_TRIDC2BG005000 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G041900.1, TraesCS2B02G054400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb089650_P001, Zm00001eb418960_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46855 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g19207, Zma_g20772, Zma_g20774 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2928, evm.TU.LG02.1214, evm.TU.LG02.1215 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1103, evm.TU.Scaffold_9_RagTag.1005 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11571, nbisL1-mrna-21180 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17964, nbisL1-mrna-6162 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10288, nbisL1-mrna-18304 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.462, evm.TU.utg000006l.378 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009270, Maker00013090 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1449, nbisL1-mrna-9911 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19814, nbisL1-mrna-5043 |
| Salicaceae | Populus euphratica | 2 | populus_peu15195, populus_peu32863 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610541 |
| Solanaceae | Solanum chilense | 1 | SOLCI003796200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029142 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.2289_chr01_+, gene_12574, gene_17441 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0895, TC05G1716, TC07G2411 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28750.v3.1 |