Basic Information
Locus ID:
Ag10G00882
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
B3 domain-containing transcription factor VRN1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 147654075 | 147655588 | - | Ag10G00882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 39,095.88 Da | 34.01 | 94.19 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 255 | 331 | 2.19563E-7 | IPR003340 |
| CDD | cd10017 | B3_DNA | 8 | 96 | 1.14184E-6 | IPR003340 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 258 | 331 | 9.81E-10 | IPR015300 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 3 | 100 | 1.39E-13 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 221 | 335 | 2.8E-9 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 3 | 100 | 7.2E-11 | IPR015300 |
| SMART | SM01019 | B3_2 | 10 | 99 | 0.0025 | IPR003340 |
| SMART | SM01019 | B3_2 | 237 | 335 | 0.0052 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 280 | 335 | 9.290718 | IPR003340 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017221326.1 | PREDICTED: uncharacterized protein LOC108198056 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164YAZ9 | TF-B3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017484 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 54 | Ag10G00036, Ag10G00367, Ag10G00397, Ag10G00497, Ag10G00882 ... |