halophFGD

Basic Information

Locus ID: Ag10G00850

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Leucine rich repeat N-terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	144672916	144676208	+	Ag10G00850

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.52	86,991.60 Da	36.94	104.00	0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	334	393	1.6E-9	IPR001611
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	561	667	3.6E-14	IPR001245
Pfam	PF00560	Leucine Rich Repeat	409	428	1.1	IPR001611
Pfam	PF00560	Leucine Rich Repeat	216	236	1.6	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	31	76	1.4E-7	IPR013210
SUPERFAMILY	SSF52047	RNI-like	83	448	2.51E-67	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	558	767	2.39E-33	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	28	159	2.4E-27	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	160	478	9.7E-93	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	666	785	1.3E-20	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	551	665	1.6E-22	-
SMART	SM00369	LRR_typ_2	285	309	170.0	IPR003591
SMART	SM00369	LRR_typ_2	189	213	22.0	IPR003591
SMART	SM00369	LRR_typ_2	333	356	41.0	IPR003591
SMART	SM00369	LRR_typ_2	405	428	110.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	559	796	12.499416	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	565	589	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	763	784	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G28650.1	Leucine-rich repeat transmembrane protein kinase family protein.
RefSeq	XP_017242844.1	PREDICTED: MDIS1-interacting receptor like kinase 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9M0G7	MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1
TrEMBL	A0A169WFJ0	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012592 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.728099	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.398858	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.831629	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.125075	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.89587	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.820761	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.408039	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.876765	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.393903	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.300749	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.171519	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.293963	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.182356	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.327918	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.618933	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.222468	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.401637	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.436148	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.556665	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.742014	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.852822	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.398491	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.442819	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.40953	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.661328	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.236161	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.787056	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.082447	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.426104	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.032465		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.323957		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.289654		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.07203		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.104974	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.140981	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.044435	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.160167	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.145519	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.978192	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.940784	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.012513	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10118, jg10119, jg14119, jg14618, jg2424, jg2714, jg35458 ... jg37794
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10348, gene_3113, gene_6429
Amaranthaceae	Atriplex hortensis	3	Ah005597, Ah018200, Ah029164
Amaranthaceae	Beta vulgaris	2	BVRB_4g077400, BVRB_4g077420
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15318, Sbi_jg17302, Sbi_jg56136, Sbi_jg61939
Amaranthaceae	Salicornia europaea	2	Seu_jg26614, Seu_jg559
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015468, GOSA_00020229, GOSA_00022870
Amaranthaceae	Suaeda glauca	6	Sgl02194, Sgl07351, Sgl24365, Sgl29541, Sgl74278, Sgl77843
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004998, gene:ENSEOMG00000009649 ... gene:ENSEOMG00000010788, gene:ENSEOMG00000028873, gene:ENSEOMG00000031986, gene:ENSEOMG00000036881, gene:ENSEOMG00000038436, gene:ENSEOMG00000040889, gene:ENSEOMG00000045823
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0008940, CQ.Regalona.r1.3BG0009600 ... CQ.Regalona.r1.4AG0006780, CQ.Regalona.r1.4BG0006900, CQ.Regalona.r1.7AG0011530, CQ.Regalona.r1.7BG0013690
Anacardiaceae	Pistacia vera	3	pistato.v30015380, pistato.v30090820, pistato.v30180680
Apiaceae	Apium graveolens	4	Ag10G00850, Ag2G01282, Ag2G01928, Ag9G01334
Arecaceae	Cocos nucifera	4	COCNU_07G009320, COCNU_08G007150, COCNU_09G002230 ... COCNU_09G009070
Arecaceae	Phoenix dactylifera	5	gene-LOC103699355, gene-LOC103711908, gene-LOC103717391 ... gene-LOC103720511, gene-LOC120105738
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1702.V1.1, AsparagusV1_04.288.V1.1 ... AsparagusV1_07.1936.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G11147, Ftri17G11296, Ftri4G30777
Brassicaceae	Arabidopsis thaliana	3	AT1G08590.1, AT4G28650.1, AT5G61480.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003570m.g.v1.0, Thhalv10006658m.g.v1.0 ... Thhalv10024302m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g07250.v2.2, Sp2g24680.v2.2, Sp7g26620.v2.2
Brassicaceae	Brassica nigra	3	BniB02g075780.2N, BniB03g002800.2N, BniB05g008910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G1260, Ceq06G2410, Ceq08G0222
Casuarinaceae	Casuarina glauca	2	Cgl06G1320, Cgl08G0174
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g06670, gene.Cymno18g03800
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate08g00720, gene.Thate08g24000, gene.Thate09g02880
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6370
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2363, evm.TU.LG03.2175, evm.TU.LG04.1368
Plantaginaceae	Plantago ovata	4	Pov_00012395, Pov_00015187, Pov_00024569, Pov_00040414
Plumbaginaceae	Limonium bicolor	1	Lb1G06459
Poaceae	Echinochloa crus-galli	6	AH01.5283, AH07.130, BH01.4927, BH07.74, CH01.5530 ... CH03.4751
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0099020, gene-QOZ80_2BG0152500 ... gene-QOZ80_3AG0233520, gene-QOZ80_3BG0294420, gene-QOZ80_8AG0617140, gene-QOZ80_8BG0644700
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0407340.1.CDS1 ... HORVU.MOREX.r3.6HG0543250.1.CDS1, HORVU.MOREX.r3.7HG0701280.1
Poaceae	Lolium multiflorum	4	gene-QYE76_019466, gene-QYE76_019467, gene-QYE76_032474 ... gene-QYE76_070831
Poaceae	Oryza coarctata	6	Oco03G000590, Oco04G000550, Oco05G002730, Oco06G002710 ... Oco15G001950, Oco16G002020
Poaceae	Oryza sativa	3	LOC_Os02g02140.1, LOC_Os03g05140.1, LOC_Os08g05290.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G483200, gene-BS78_04G008900 ... gene-BS78_07G041300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0100092, Pt_Chr0100198, Pt_Chr0100206, Pt_Chr0200919 ... Pt_Chr0402870, Pt_Chr0405582
Poaceae	Sporobolus alterniflorus	8	Chr01G037400, Chr04G004610, Chr06G035970, Chr07G006930 ... Chr0G010260, Chr15G027140, Chr20G010640, Chr29G011720
Poaceae	Thinopyrum elongatum	3	Tel4E01G514300, Tel6E01G082400, Tel7E01G523700
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG055770, gene_TRIDC4BG052660 ... gene_TRIDC6AG003630, gene_TRIDC6BG005190, gene_TRIDC7AG042650, gene_TRIDC7BG033810
Poaceae	Triticum aestivum	9	TraesCS4A02G409400.1.cds1, TraesCS4B02G309300.1.cds1 ... TraesCS4D02G307500.1.cds1, TraesCS6A02G029100.1.cds1, TraesCS6B02G042000.1.cds1, TraesCS6D02G033300.1.cds1, TraesCS7A02G305700.1, TraesCS7B02G205900.1, TraesCS7D02G302400.1
Poaceae	Zea mays	4	Zm00001eb003660_P001, Zm00001eb172920_P001 ... Zm00001eb229700_P001, Zm00001eb402940_P001
Poaceae	Zoysia japonica	2	nbis-gene-41556, nbis-gene-4523
Poaceae	Zoysia macrostachya	5	Zma_g12054, Zma_g14824, Zma_g2083, Zma_g23604, Zma_g4433
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.941, evm.TU.LG08.792, evm.TU.LG11.1498 ... evm.TU.LG12.799, evm.TU.LG22.1133
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g15720, gene.Posoc07g04720
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1258, evm.TU.Scaffold_1_RagTag.333 ... evm.TU.Scaffold_4_RagTag.221, evm.TU.Scaffold_9_RagTag.1056
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12450, nbisL1-mrna-12559, nbisL1-mrna-21129 ... nbisL1-mrna-29131, nbisL1-mrna-7900
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10065, nbisL1-mrna-18608, nbisL1-mrna-8970 ... nbisL1-mrna-9006
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12826, nbisL1-mrna-2075, nbisL1-mrna-5380 ... nbisL1-mrna-7279
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000003l.144, add.evm.TU.utg000010l.115 ... add.evm.TU.utg000012l.83, evm.TU.utg000008l.136
Rhizophoraceae	Kandelia obovata	4	Maker00001364, Maker00008876, Maker00009420, Maker00011041
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-1413, nbisL1-mrna-2412, nbisL1-mrna-569 ... nbisL1-mrna-7742
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-21516, nbisL1-mrna-301, nbisL1-mrna-4999 ... nbisL1-mrna-6193, nbisL1-mrna-8892
Salicaceae	Populus euphratica	5	populus_peu03345, populus_peu16000, populus_peu19500 ... populus_peu30766, populus_peu34191
Solanaceae	Lycium barbarum	5	gene-LOC132610387, gene-LOC132615614, gene-LOC132631700 ... gene-LOC132632468, gene-LOC132640476
Solanaceae	Solanum chilense	4	SOLCI004265800, SOLCI005301700, SOLCI005499800 ... SOLCI007350200
Solanaceae	Solanum pennellii	4	gene-LOC107015273, gene-LOC107015818, gene-LOC107018827 ... gene-LOC114073832
Tamaricaceae	Reaumuria soongarica	3	gene_12967, gene_4296, gene_7147
Tamaricaceae	Tamarix chinensis	3	TC01G0550, TC05G0198, TC05G2260
Zosteraceae	Zostera marina	1	Zosma04g25890.v3.1