halophFGD

Basic Information

Locus ID: Ag10G00843

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	143921512	143926944	-	Ag10G00843

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.34	58,858.65 Da	40.42	91.11	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	218	512	5.1263E-50	-
Pfam	PF00400	WD domain, G-beta repeat	302	342	0.046	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	434	470	1.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	262	298	0.0061	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	476	512	2.4E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	219	252	8.9E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	212	512	2.29E-63	IPR036322
Gene3D	G3DSA:2.130.10.10	-	208	513	6.4E-66	IPR015943
SMART	SM00320	WD40_4	428	470	0.11	IPR001680
SMART	SM00320	WD40_4	473	513	1.7E-9	IPR001680
SMART	SM00320	WD40_4	259	298	2.1E-7	IPR001680
SMART	SM00667	Lish	20	52	0.0019	IPR006594
SMART	SM00320	WD40_4	344	384	42.0	IPR001680
SMART	SM00320	WD40_4	214	253	8.2E-6	IPR001680
SMART	SM00320	WD40_4	301	342	0.0069	IPR001680
SMART	SM00320	WD40_4	386	424	7.7	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	20	52	9.382536	IPR006594
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	221	262	11.210233	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	266	307	13.983944	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	221	252	9.309238	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	453	479	8.971213	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	480	512	13.950525	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	266	302	10.811958	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	480	522	12.156496	-
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	53	110	8.640741	IPR006595

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17985 (activating molecule in BECN1-regulated autophagy protein 1)

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04140 (Autophagy - animal) map04140 (Autophagy - animal)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G43920.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_017243351.1	PREDICTED: WD repeat-containing protein 26 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FND4	WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1
TrEMBL	A0A169WGB6	WD repeat-containing protein 26 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012614 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	11.536103	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.96593	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.316704	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	9.891358	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.158707	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	15.229431	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	15.920675	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	13.471797	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	13.570192	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	15.425887	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.819266	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.742044	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.62958	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.587307	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.056607	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.383877	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.656574	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.354988	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.35323	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.600902	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	10.586308	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.454296	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.51564	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.00748	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.502118	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.961843	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.179479	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	6.883983	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.382526	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.53927		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.654943		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.31006		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	19.883335		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.265697		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	21.324539		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.794518		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.140437		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.015388		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	13.501139	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	11.258019	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.248831	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	17.954056	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.726669	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	30.022381	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	24.333313	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	19.807865	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	19.13995	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.515842	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.407299	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	24.385809	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg16228, jg19040, jg19043, jg19045, jg19048, jg24101 ... jg37461
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17794, gene_5317
Amaranthaceae	Atriplex hortensis	4	Ah027031, Ah029123, Ah037565, Ah037594
Amaranthaceae	Beta vulgaris	2	BVRB_6g132130, BVRB_7g166270
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13522, Sbi_jg52363, Sbi_jg59153, Sbi_jg63483
Amaranthaceae	Salicornia europaea	2	Seu_jg23419, Seu_jg9489
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00023186, GOSA_00023187, GOSA_00023189, GOSA_00023377 ... GOSA_00023378, GOSA_00029520
Amaranthaceae	Suaeda glauca	4	Sgl33515, Sgl38864, Sgl72428, Sgl75977
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000001394, gene:ENSEOMG00000003013 ... gene:ENSEOMG00000007855, gene:ENSEOMG00000026627, gene:ENSEOMG00000036103, gene:ENSEOMG00000040929, gene:ENSEOMG00000052547
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0021550, CQ.Regalona.r1.6BG0022730 ... CQ.Regalona.r1.7AG0011230, CQ.Regalona.r1.7BG0013400, CQ.Regalona.r1.9AG0000100, CQ.Regalona.r1.9BG0022010
Anacardiaceae	Pistacia vera	8	pistato.v30013160, pistato.v30015190, pistato.v30201810 ... pistato.v30201820, pistato.v30202660, pistato.v30202690, pistato.v30202700, pistato.v30212900
Apiaceae	Apium graveolens	4	Ag10G00843, Ag1G01685, Ag5G01877, Ag8G01943
Arecaceae	Cocos nucifera	6	COCNU_01G015670, COCNU_07G009010, scaffold002739G000010 ... scaffold009168G000010, scaffold009168G000020, scaffold013376G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695548, gene-LOC103696220, gene-LOC103707677 ... gene-LOC103722740
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.613.V1.1, AsparagusV1_06.39.V1.1 ... AsparagusV1_08.2950.V1.1, AsparagusV1_10.1880.V1.1, AsparagusV1_10.1881.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G28836, Ftri13G11884, Ftri3G21437
Brassicaceae	Arabidopsis thaliana	2	AT5G08560.1, AT5G43920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003179m.g.v1.0, Thhalv10013060m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g08740.v2.2, Sp2g26750.v2.2, Sp6g34330.v2.2
Brassicaceae	Brassica nigra	5	BniB02g052620.2N, BniB04g001790.2N, BniB04g017400.2N ... BniB06g011980.2N, BniB08g003910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2175, Ceq03G1989, Ceq06G2280
Casuarinaceae	Casuarina glauca	3	Cgl02G2252, Cgl03G2137, Cgl06G2390
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g11340
Dunaliellaceae	Dunaliella salina	1	Dusal.1069s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g03360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10267, nbisL1-mrna-2193, nbisL1-mrna-6802
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1576, evm.TU.LG03.2506
Plantaginaceae	Plantago ovata	2	Pov_00001348, Pov_00024562
Plumbaginaceae	Limonium bicolor	3	Lb3G20752, Lb5G28636, Lb6G30403
Poaceae	Echinochloa crus-galli	6	AH01.1833, AH08.230, BH01.2128, BH08.214, CH01.2246 ... CH08.251
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0127160, gene-QOZ80_2BG0182650 ... gene-QOZ80_8AG0616230, gene-QOZ80_8BG0643740
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0040900.1, HORVU.MOREX.r3.5HG0440360.2 ... HORVU.MOREX.r3.7HG0702990.1
Poaceae	Lolium multiflorum	4	gene-QYE76_001411, gene-QYE76_011398, gene-QYE76_033585 ... gene-QYE76_033586
Poaceae	Oryza coarctata	4	Oco03G008170, Oco04G008570, Oco19G005600, Oco20G005520
Poaceae	Oryza sativa	2	LOC_Os02g19210.1, LOC_Os10g32770.2
Poaceae	Paspalum vaginatum	2	gene-BS78_01G211600, gene-BS78_07G032000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0402545, Pt_Chr0502527, Pt_Chr0704050, Pt_Chr0705494
Poaceae	Sporobolus alterniflorus	8	Chr06G013250, Chr09G010480, Chr0G025840, Chr0G029730 ... Chr16G001050, Chr17G001030, Chr20G013170, Chr29G012160
Poaceae	Thinopyrum elongatum	3	Tel1E01G275500, Tel5E01G152900, Tel7E01G535200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG022320, gene_TRIDC1BG027020 ... gene_TRIDC5AG011420, gene_TRIDC5BG013370, gene_TRIDC7AG043360, gene_TRIDC7BG034630
Poaceae	Triticum aestivum	9	TraesCS1A02G146900.1, TraesCS1B02G164700.1 ... TraesCS1D02G145000.1, TraesCS5A02G074900.1, TraesCS5B02G081300.1, TraesCS5D02G088400.1, TraesCS7A02G311000.1, TraesCS7B02G210600.1, TraesCS7D02G307300.1
Poaceae	Zea mays	3	Zm00001eb046310_P001, Zm00001eb173190_P001 ... Zm00001eb261740_P004
Poaceae	Zoysia japonica	3	nbis-gene-19262, nbis-gene-39178, nbis-gene-41486
Poaceae	Zoysia macrostachya	3	Zma_g16159, Zma_g22416, Zma_g23559
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.510, evm.TU.LG03.2384, evm.TU.LG03.2385 ... evm.TU.LG04.256, evm.TU.LG17.1428, evm.TU.LG17.1430
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g07110, gene.Posoc08g08590
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.6, evm.TU.Scaffold_17_RagTag.1002 ... evm.TU.Scaffold_17_RagTag.1003, evm.TU.Scaffold_5_RagTag.1161
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-11632, nbisL1-mrna-23725, nbisL1-mrna-23726 ... nbisL1-mrna-26291
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11078, nbisL1-mrna-12120, nbisL1-mrna-6119
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10237, nbisL1-mrna-17363, nbisL1-mrna-21879 ... nbisL1-mrna-21880
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.7, evm.TU.utg000006l.421 ... evm.TU.utg000013l.560
Rhizophoraceae	Kandelia obovata	3	Maker00004520, Maker00004641, Maker00014113
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10956, nbisL1-mrna-11715, nbisL1-mrna-9875
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19862, nbisL1-mrna-23068, nbisL1-mrna-23069 ... nbisL1-mrna-2916
Salicaceae	Populus euphratica	6	populus_peu05939, populus_peu15013, populus_peu19808 ... populus_peu26662, populus_peu26667, populus_peu32670
Solanaceae	Lycium barbarum	4	gene-LOC132610349, gene-LOC132618795, gene-LOC132636700 ... gene-LOC132640864
Solanaceae	Solanum chilense	4	SOLCI001770700, SOLCI002039300, SOLCI003769700 ... SOLCI006669800
Solanaceae	Solanum pennellii	4	gene-LOC107005623, gene-LOC107020475, gene-LOC107025686 ... gene-LOC107029499
Tamaricaceae	Reaumuria soongarica	3	STRG.2139_chr01_+, STRG.8197_chr05_-, gene_1632
Tamaricaceae	Tamarix chinensis	3	TC01G0524, TC01G2384, TC03G1387
Zosteraceae	Zostera marina	1	Zosma06g11670.v3.1