Basic Information
Locus ID:
Ag10G00835
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF3741)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 143468632 | 143474003 | - | Ag10G00835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 106,823.24 Da | 58.58 | 68.72 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12552 | Protein of unknown function (DUF3741) | 209 | 253 | 8.7E-18 | IPR022212 |
| Pfam | PF14309 | Domain of unknown function (DUF4378) | 769 | 940 | 1.2E-27 | IPR025486 |
| Pfam | PF14383 | DUF761-associated sequence motif | 108 | 120 | 7.9E-5 | IPR032795 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 659 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 454 | - | - |
| Coils | Coil | Coil | 915 | 935 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28760.1 | Protein of unknown function (DUF3741). | 0 |
| RefSeq | XP_017243277.1 | PREDICTED: uncharacterized protein LOC108215333 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162AP44 | DUF3741 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012619 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.176758 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 44.785046 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 64.698883 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 79.890793 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 75.080223 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.040874 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 44.782261 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.580104 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.655025 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.67989 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.439661 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.725798 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.242884 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.500587 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.760123 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.639668 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.730738 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.86732 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.107765 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.905662 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.660091 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.320446 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.24137 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.539306 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.703202 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.487783 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.067491 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.425512 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.524482 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.36937 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.237138 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.219061 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.70153 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.531384 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.602115 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.795289 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.562717 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.019627 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.192305 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.822874 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.660394 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.368305 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.162467 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.55147 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.334453 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.676339 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.918303 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.295922 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.137006 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.798623 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16233, jg35477, jg35478, jg37779, jg8641 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6444 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029080 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1425, Sbi_jg35142 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3309 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003521 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73764, Sgl77269 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010459, gene:ENSEOMG00000034632 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010990, CQ.Regalona.r1.7BG0013150 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30015000, pistato.v30015080 |
| Apiaceae | Apium graveolens | 7 | Ag10G00835, Ag2G01271, Ag2G01272, Ag4G01352, Ag7G00052 ... |
| Arecaceae | Cocos nucifera | 4 | COCNU_07G009250, COCNU_08G011400, COCNU_09G009150 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103706972, gene-LOC103711875, gene-LOC103721293 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.261.V1.1, AsparagusV1_07.1939.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G10765, Ftri15G13889, Ftri3G29313, Ftri9G29325 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G20240.1, AT4G28760.1, AT5G43880.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001917m.g.v1.0, Thhalv10003146m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g25260.v2.2, Sp2g08680.v2.2, Sp3g33470.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB02g061200.2N, BniB03g069760.2N, BniB04g017470.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2042 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2150 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g07070, gene.Cymno14g03250 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g05900, gene.Thate08g24040 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-2989, nbisL1-mrna-6378, nbisL1-mrna-9747 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1496 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015151 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb0G37483, Lb3G19906, Lb4G23793, Lb5G28701, Lb5G28704 ... |
| Poaceae | Echinochloa crus-galli | 13 | AH01.5275, AH07.2613, AH07.3943, BH01.1108, BH01.1109 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0150350, gene-QOZ80_2BG0205810 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0180210.1, HORVU.MOREX.r3.4HG0407120.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_023622, gene-QYE76_026614, gene-QYE76_045002 ... |
| Poaceae | Oryza coarctata | 9 | Oco03G015340, Oco03G025280, Oco04G015960, Oco04G015990 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os02g40410.1, LOC_Os02g57140.1, LOC_Os03g04990.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G484000, gene-BS78_04G197400, gene-BS78_K248100 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100105, Pt_Chr0100218, Pt_Chr0204671, Pt_Chr0301957 ... |
| Poaceae | Sporobolus alterniflorus | 19 | Chr01G037510, Chr04G004640, Chr06G007480, Chr07G006910 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G630600, Tel4E01G512200, Tel6E01G703200 |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC2AG052450, gene_TRIDC2BG055510 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS2A02G361900.1, TraesCS2B02G379800.2 ... |
| Poaceae | Zea mays | 8 | Zm00001eb003540_P007, Zm00001eb046660_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18528, nbis-gene-2929, nbis-gene-8316 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g14704, Zma_g16669, Zma_g17410, Zma_g2090, Zma_g21582 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.486, evm.TU.LG03.958, evm.TU.LG04.273 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g15800, gene.Posoc06g02190 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1169, evm.TU.Scaffold_9_RagTag.1076 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11640, nbisL1-mrna-21109 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-8989, nbisL1-mrna-9055 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11273, nbisL1-mrna-7261 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.414, evm.TU.utg000006l.676 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009393, Maker00014073 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1398, nbisL1-mrna-9868 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19871, nbisL1-mrna-4982 |
| Salicaceae | Populus euphratica | 4 | populus_peu26679, populus_peu30794, populus_peu37259 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607576, gene-LOC132610245 |
| Solanaceae | Solanum chilense | 2 | SOLCI004652800, SOLCI004894900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023200, gene-LOC107031451 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.380_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0495 |
| Zosteraceae | Zostera marina | 2 | Zosma04g25900.v3.1, Zosma05g18580.v3.1 |