halophFGD

Basic Information

Locus ID: Ag10G00806

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	140382820	140383017	+	Ag10G00806

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.22	7,003.81 Da	54.38	87.08	0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	15	56	1.9E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	8	56	6.05E-5	IPR036047

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017249366.1	PREDICTED: putative F-box protein PP2-B12 isoform X2 [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5BEW3	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_012499 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.292023	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.193057	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.311964	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.756693	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.803652	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.396616	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.409105	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.515419	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.930214	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.262812	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.09642	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.301467	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.331146	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.118684	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.418511	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.401957	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.280785	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.407157	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.824231	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.288416	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.204902	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.137741	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.495692	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.05179	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.92752		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.736481		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.940933		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.322762		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.694694		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.79505		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.78705		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.9483		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.763862		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.362835	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	19.117439	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	13.267647	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.747188	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.844768	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.588465	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.157163	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.872265	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	5.88631	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.259275	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.958575	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.033312	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag10G00804, Ag10G00806, AgUnG00332