Basic Information
Locus ID:
Ag10G00782
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 139146838 | 139153285 | + | Ag10G00782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 51,026.42 Da | 42.55 | 80.48 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 42 | 339 | 2.35E-30 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 24 | 205 | 7.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 206 | 357 | 5.8E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 242 | 281 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 324 | 0.003 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 185 | 440.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 333 | 9.104886 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 311 | 325 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 414 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29320.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017237992.1 | PREDICTED: WD repeat-containing protein 74 [Daucus carota subsp. sativus] | 0 |
| Q54FW9 | WD repeat-containing protein DDB_G0290555 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290555 PE=4 SV=1 | 0 | |
| TrEMBL | A0A162AP98 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012679 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.266022 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.533043 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.897095 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.381093 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.85386 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.720956 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.74903 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.463257 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.608576 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.925076 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.793228 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.682867 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.833445 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.133102 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.038699 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.045894 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.706663 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.844278 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.735396 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.275848 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.119825 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.31684 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.769314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.434923 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.639339 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.139126 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.804032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.220916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.751405 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.358588 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.518651 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.165731 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.521577 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.43355 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.853244 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.776671 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.875927 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.812072 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.352791 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.222003 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.287341 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.808651 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.461589 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.326582 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.925516 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.078743 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.362912 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 33.295658 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.350431 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 33.399822 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18466 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14024 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah001954, Ah036320, Ah036321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g110570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31670, Sbi_jg57642 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25322 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008866 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62821, Sgl67437 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006694, gene:ENSEOMG00000022797 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.3AG0018630, CQ.Regalona.r1.5BG0017590 ... |
| Apiaceae | Apium graveolens | 1 | Ag10G00782 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719683 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1000.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16546 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G29320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007651m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g016650.2N, BniB04g043880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1694 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1876 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0290s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g02600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1045 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014582 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07785 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3101, BH03.3286, CH03.3472 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568510, gene-QOZ80_7BG0599840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0142760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041098, gene-QYE76_041193 |
| Poaceae | Oryza coarctata | 2 | Oco13G008160, Oco14G008630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G288100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304150 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G008150, Chr27G011370, Chr28G007470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G420800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030330, gene_TRIDC2BG034020 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G233000.1, TraesCS2B02G250300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105680_P001, Zm00001eb322320_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38360 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5204 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.426, evm.TU.LG21.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g04700 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60456.7, evm.TU.Scaffold_11_RagTag.1541 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12305 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15169 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12688 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.189 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008680 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-674 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8765 |
| Salicaceae | Populus euphratica | 2 | populus_peu28816, populus_peu30230 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132598932, gene-LOC132607899, gene-LOC132615385 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026706 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11159 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2605 |
| Zosteraceae | Zostera marina | 2 | Zosma04g25640.v3.1, Zosma05g05400.v3.1 |