Basic Information
Locus ID:
Ag10G00772
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LEC14B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 137501213 | 137511049 | - | Ag10G00772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 55,703.81 Da | 44.80 | 70.95 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 427 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 468 | 0.0082 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 299 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 256 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 345 | 2.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 468 | 2.44E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 121 | 361 | 3.6E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 364 | 483 | 1.1E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 214 | 256 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 299 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 427 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 469 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 114 | 153 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 198 | 380.0 | IPR001680 |
| PIRSF | PIRSF038135 | WD_rpt_23 | 1 | 491 | 3.1E-204 | IPR017399 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 437 | 468 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 299 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 299 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 224 | 265 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 347 | 10.601049 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 3.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 243 | 257 | 3.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 3.5E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 48 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017243154.1 | PREDICTED: LEC14B protein-like [Daucus carota subsp. sativus] | 0 |
| Q40153 | LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166CEZ0 | LEC14B homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012445 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 40.626884 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 34.54493 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 40.817204 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 46.287724 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 46.998554 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 42.529873 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 41.832458 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 26.44768 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.526501 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.593216 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 36.182953 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 35.420666 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 39.133873 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 34.864365 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.422295 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.790908 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.455358 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.679123 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.785667 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.908846 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.67334 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 27.706003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.270714 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.892376 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.413975 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.804674 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.531841 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.290306 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.966576 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.0895 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.03369 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.558228 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.09593 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.722398 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.711205 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.430307 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.812952 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.413788 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.655532 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.887694 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.048071 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.244629 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.905827 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 68.498093 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 67.477448 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.402941 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 50.429134 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 45.442509 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 42.394596 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 48.589634 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27965, jg8840 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4240 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020659, Ah029679 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g165700 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg16358, Sbi_jg35803, Sbi_jg51804, Sbi_jg829 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13358, Seu_jg3896 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019786 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72037, Sgl75604 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006827, gene:ENSEOMG00000012738 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0016640, CQ.Regalona.r1.3BG0016510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30011350, pistato.v30238220 |
| Apiaceae | Apium graveolens | 5 | Ag10G00772, Ag2G02426, Ag5G02458, Ag8G01695, Ag9G01820 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002780, scaffold006566G000150 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721036, gene-LOC103724227 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2023.V1.1, AsparagusV1_07.935.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G03224, Ftri3G19980, Ftri9G25668 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03060.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g039150.2N, BniB08g045690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1641 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1701 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0973s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6289, nbisL1-mrna-9649 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.239, evm.TU.LG11.1392, evm.TU.LG11.995 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024805 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36260 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.2503, AH05.775, BH02.1792, BH05.1002, BH05.2585 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0017480, gene-QOZ80_1BG0066380 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0014190.1, HORVU.MOREX.r3.1HG0019410.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009485, gene-QYE76_013335 |
| Poaceae | Oryza coarctata | 5 | Oco01G010620, Oco02G011360, Oco09G009060, Oco10G002120 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g28680.1, LOC_Os05g05210.1, LOC_Os05g33710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G040800, gene-BS78_09G141300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0500549, Pt_Chr0505205, Pt_Chr0506203 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G008020, Chr13G016820, Chr18G001260, Chr18G009000 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G134700, Tel1E01G170400, Tel1E01G422800 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG008920, gene_TRIDC1AG012340 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G065300.2, TraesCS1A02G086800.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb349670_P002, Zm00001eb354420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18207, nbis-gene-52838 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g26411, Zma_g26852, Zma_g27685 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.2022, evm.TU.LG03.761, evm.TU.LG12.968 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.521, evm.TU.Scaffold_9_RagTag.875 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1442, nbisL1-mrna-21349 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19926, nbisL1-mrna-21386 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18431, nbisL1-mrna-6245 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.546, evm.TU.utg000019l.900 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009533, Maker00012425 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1530, nbisL1-mrna-6297 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2052, nbisL1-mrna-5182 |
| Salicaceae | Populus euphratica | 4 | populus_peu07816, populus_peu22033, populus_peu22037 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605607, gene-LOC132645046 |
| Solanaceae | Solanum chilense | 2 | SOLCI001973800, SOLCI002921100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008401, gene-LOC107022037 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8484 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1524 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20360.v3.1 |