Basic Information
Locus ID:
Ag10G00761
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 136461418 | 136466064 | + | Ag10G00761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 99,747.37 Da | 40.50 | 99.11 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 624 | 891 | 4.3214E-85 | - |
| Pfam | PF12819 | Malectin-like domain | 31 | 347 | 4.7E-53 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 620 | 888 | 1.3E-46 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 440 | 498 | 2.0E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 601 | 887 | 9.17E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 361 | 508 | 1.17E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 359 | 530 | 3.9E-27 | IPR032675 |
| Gene3D | G3DSA:2.60.120.430 | - | 192 | 348 | 6.4E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 590 | 693 | 8.7E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 694 | 900 | 3.8E-58 | - |
| SMART | SM00369 | LRR_typ_2 | 438 | 460 | 9.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 485 | 509 | 89.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 618 | 894 | 2.5E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 461 | 484 | 0.18 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 618 | 900 | 39.240944 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 463 | 484 | 7.273015 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 440 | 462 | 7.573342 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 624 | 646 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 740 | 752 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48740.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017237598.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Daucus carota subsp. sativus] | 0 |
| C0LGV0 | Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana OX=3702 GN=At5g48740 PE=1 SV=1 | 0 | |
| TrEMBL | A0A169WHN7 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012645 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.706124 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.380715 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.173427 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.562213 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.389562 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.155249 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.055354 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 46.446308 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.19371 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 50.950737 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.583469 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.599625 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.154789 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.540107 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.816462 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.211636 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.513246 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.425581 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.435943 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.166001 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 37.380341 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.270203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.553524 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.731018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.182085 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.340131 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.609058 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.453693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.50902 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.937411 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.094364 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.100016 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.109878 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.08924 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.17724 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.040118 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.032618 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.071186 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.56322 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.006078 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.054317 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.86214 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.572037 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.494051 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.84831 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36125, jg8038 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028266 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26545, Sbi_jg34022 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15072 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011923 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl73830, Sgl77187, Sgl77332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000041428 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010340, CQ.Regalona.r1.7BG0012420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014480 |
| Apiaceae | Apium graveolens | 1 | Ag10G00761 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G004280, COCNU_15G004290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710569, gene-LOC103724286 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.898.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G30587 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003630m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g069800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1996 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2104 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1563 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011577 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28675 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1027, evm.TU.LG12.704 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1208 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11679 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9079 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11240 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.704 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013562 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9839 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19907 |
| Salicaceae | Populus euphratica | 1 | populus_peu30911 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610088 |
| Solanaceae | Solanum chilense | 1 | SOLCI001110400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031385 |