halophFGD

Basic Information

Locus ID: Ag10G00753

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Transcriptional corepressor LEUNIG-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	136044686	136051172	+	Ag10G00753

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.37	80,660.76 Da	53.89	66.61	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	462	740	7.87248E-57	-
Pfam	PF00400	WD domain, G-beta repeat	498	532	1.3E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	463	490	0.0085	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	539	576	0.23	IPR001680
Pfam	PF08513	LisH	10	36	1.6E-6	IPR006594
Pfam	PF00400	WD domain, G-beta repeat	623	657	0.12	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	706	740	0.099	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	462	740	2.02E-61	IPR036322
Gene3D	G3DSA:2.130.10.10	-	591	740	5.0E-29	IPR015943
Gene3D	G3DSA:2.130.10.10	-	434	590	1.4E-31	IPR015943
SMART	SM00667	Lish	8	40	9.8E-4	IPR006594
SMART	SM00320	WD40_4	536	576	4.3E-4	IPR001680
SMART	SM00320	WD40_4	579	616	11.0	IPR001680
SMART	SM00320	WD40_4	660	699	0.95	IPR001680
SMART	SM00320	WD40_4	452	490	6.9E-4	IPR001680
SMART	SM00320	WD40_4	619	657	0.0013	IPR001680
SMART	SM00320	WD40_4	493	532	1.5E-6	IPR001680
SMART	SM00320	WD40_4	701	740	0.0011	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	708	740	12.780889	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	543	585	9.305395	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	465	499	9.104886	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	8	40	9.512967	IPR006594
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	708	740	11.945589	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	500	532	13.582925	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	500	532	11.260138	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	477	491	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	477	491	9.9E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	519	533	9.9E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	727	740	9.9E-5	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	79	105	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	316	369	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	79	108	-	-
Coils	Coil	Coil	79	99	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32700.6	LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.
RefSeq	XP_017242007.1	PREDICTED: transcriptional corepressor LEUNIG_HOMOLOG-like [Daucus carota subsp. sativus]
Swiss-Prot	O48847	Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1
TrEMBL	A0A5B7AJ74	LisH domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_025439 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	26.684591	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.567562	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.847506	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.03429	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.276405	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.231545	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.000826	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.141444	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	31.165596	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	31.022226	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	30.154167	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.3258	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.193905	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.185741	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.782863	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.906308	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.98957	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.248827	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.478337	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.616303	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.457114	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.22239	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.944535	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.700934	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.317133	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.663125	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.616658	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.415039	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.492232	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.819241		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.657066		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.141844		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.65733		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	9.773129		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.568407		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.155941		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.01255		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.64722		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.107243	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.893844	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.701143	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.892479	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.322742	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.33359	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.770949	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.001849	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	5.188553	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.511894	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.722746	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.57943	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16251, jg20280, jg22059, jg8611
Aizoaceae	Mesembryanthemum crystallinum	2	gene_308, gene_6472
Amaranthaceae	Atriplex hortensis	1	Ah028258
Amaranthaceae	Beta vulgaris	2	BVRB_7g167480, BVRB_8g183000
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg26043, Sbi_jg26535, Sbi_jg34031, Sbi_jg56959 ... Sbi_jg9889
Amaranthaceae	Salicornia europaea	2	Seu_jg15064, Seu_jg18834
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011930, GOSA_00017054
Amaranthaceae	Suaeda glauca	4	Sgl45950, Sgl50646, Sgl73822, Sgl77324
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005931, gene:ENSEOMG00000037452 ... gene:ENSEOMG00000041460
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0010420, CQ.Regalona.r1.7BG0012500 ... CQ.Regalona.r1.8AG0005430, CQ.Regalona.r1.8BG0005590
Anacardiaceae	Pistacia vera	2	pistato.v30014570, pistato.v30241180
Apiaceae	Apium graveolens	3	Ag10G00753, Ag2G01249, Ag2G02796
Arecaceae	Cocos nucifera	4	COCNU_07G000990, COCNU_08G011640, COCNU_09G009570 ... COCNU_10G000720
Arecaceae	Phoenix dactylifera	4	gene-LOC103703910, gene-LOC103706939, gene-LOC103711896 ... gene-LOC103716258
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.166.V1.1, AsparagusV1_07.1976.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G04211, Ftri12G14860, Ftri15G01661, Ftri4G09309
Brassicaceae	Arabidopsis thaliana	1	AT2G32700.7
Brassicaceae	Eutrema salsugineum	1	Thhalv10016303m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g15040.v2.2, SpUn0199_0030.v2.2
Brassicaceae	Brassica nigra	3	BniB01g011410.2N, BniB06g021800.2N, BniB08g020560.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G2005, Ceq07G0750
Casuarinaceae	Casuarina glauca	2	Cgl06G2114, Cgl07G0795
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g00390
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g06810
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-5394, nbisL1-mrna-6384, nbisL1-mrna-956 ... nbisL1-mrna-9750, nbisL1-mrna-9751
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.1547, evm.TU.LG11.588, evm.TU.LG11.589
Plantaginaceae	Plantago ovata	5	Pov_00012969, Pov_00015092, Pov_00024507, Pov_00024510 ... Pov_00031791
Plumbaginaceae	Limonium bicolor	1	Lb4G23999
Poaceae	Echinochloa crus-galli	6	AH01.649, AH07.3919, BH01.73, BH07.3726, CH07.3787 ... CH09.3263
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0009880, gene-QOZ80_1BG0058470 ... gene-QOZ80_2AG0150070, gene-QOZ80_2BG0205530, gene-QOZ80_3AG0207350
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0537790.1, HORVU.MOREX.r3.6HG0628510.1
Poaceae	Lolium multiflorum	2	gene-QYE76_026351, gene-QYE76_026670
Poaceae	Oryza coarctata	6	Oco03G025040, Oco04G025520, Oco05G029570, Oco06G030530 ... Oco07G010450, Oco08G010220
Poaceae	Oryza sativa	3	LOC_Os02g56880.1, LOC_Os03g64300.1, LOC_Os04g43130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G001500, gene-BS78_03G081900 ... gene-BS78_04G316500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0106930, Pt_Chr0106931, Pt_Chr0604270, Pt_Chr0604343
Poaceae	Sporobolus alterniflorus	8	Chr01G000040, Chr04G033050, Chr07G032170, Chr09G016760 ... Chr0G014110, Chr12G038290, Chr13G001010, Chr15G000990
Poaceae	Thinopyrum elongatum	1	Tel5E01G904500
Poaceae	Triticum dicoccoides	4	gene_TRIDC5BG083790, gene_TRIDC6AG057060 ... gene_TRIDC6BG066500, gene_TRIDC7BG000320
Poaceae	Triticum aestivum	8	TraesCS5B02G568500.2, TraesCS5D02G560700.2 ... TraesCS6A02G383400.1, TraesCS6B02G422600.1, TraesCS6B02G422700.1, TraesCS6D02G368200.1, TraesCS6D02G368300.1, TraesCS7B02G003100.1
Poaceae	Zea mays	2	Zm00001eb065280_P001, Zm00001eb258660_P001
Poaceae	Zoysia japonica	2	nbis-gene-13185, nbis-gene-8342
Poaceae	Zoysia macrostachya	3	Zma_g14684, Zma_g17395, Zma_g8
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.35, evm.TU.LG03.1014, evm.TU.LG04.712 ... evm.TU.LG12.716
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g01030, gene.Posoc06g19410
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.838, evm.TU.Scaffold_12_RagTag.839 ... evm.TU.Scaffold_3_RagTag.1369, evm.TU.Scaffold_5_RagTag.1202, evm.TU.Scaffold_6_RagTag.974
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11670, nbisL1-mrna-15693, nbisL1-mrna-1695
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12871, nbisL1-mrna-18194, nbisL1-mrna-20549 ... nbisL1-mrna-3654, nbisL1-mrna-4048, nbisL1-mrna-9076
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11247, nbisL1-mrna-18274, nbisL1-mrna-21576 ... nbisL1-mrna-2616
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000006l.697, evm.TU.utg000011l.616 ... evm.TU.utg000019l.416, evm.TU.utg000027l.132
Rhizophoraceae	Kandelia obovata	6	Maker00001630, Maker00006284, Maker00006302, Maker00006307 ... Maker00007482, Maker00013031
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10624, nbisL1-mrna-12239, nbisL1-mrna-15147 ... nbisL1-mrna-9846
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-18131, nbisL1-mrna-19900, nbisL1-mrna-21933 ... nbisL1-mrna-4366
Salicaceae	Populus euphratica	4	populus_peu04067, populus_peu10049, populus_peu30918 ... populus_peu34901
Solanaceae	Lycium barbarum	7	gene-LOC132607240, gene-LOC132607261, gene-LOC132610110 ... gene-LOC132622306, gene-LOC132622484, gene-LOC132640583, gene-LOC132640650
Solanaceae	Solanum chilense	3	SOLCI001175500, SOLCI004650700, SOLCI005438600
Solanaceae	Solanum pennellii	4	gene-LOC107011710, gene-LOC107023312, gene-LOC107028047 ... gene-LOC107031289
Tamaricaceae	Reaumuria soongarica	1	gene_7164
Tamaricaceae	Tamarix chinensis	1	TC01G0621
Zosteraceae	Zostera marina	3	Zosma01g38480.v3.1, Zosma01g38490.v3.1, Zosma05g22500.v3.1