halophFGD

Basic Information

Locus ID: Ag10G00741

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CCR2

Description: NAD(P)H-binding

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	134103884	134104200	+	Ag10G00741

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.37	7,969.04 Da	38.48	104.17	0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Gene3D	G3DSA:3.40.50.720	-	13	71	1.6E-9	-

KEGG Pathway

KO Term:

K09753 (cinnamoyl-CoA reductase [EC:1.2.1.44])

Pathway:

ko00940 (Phenylpropanoid biosynthesis) map00940 (Phenylpropanoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00039 (Monolignol biosynthesis, phenylalanine/tyrosine => monolignol)

Reaction:

R01615 (4-Hydroxycinnamyl aldehyde + CoA + NADP+ <=> p-Coumaroyl-CoA + NADPH + H+) R01941 (Caffeic aldehyde + CoA + NADP+ <=> Caffeoyl-CoA + NADPH + H+) R02193 (Coniferyl aldehyde + CoA + NADP+ <=> Feruloyl-CoA + NADPH + H+) R02220 (Sinapoyl aldehyde + CoA + NADP+ <=> Sinapoyl-CoA + NADPH + H+) R02506 (Cinnamaldehyde + CoA + NADP+ <=> Cinnamoyl-CoA + NADPH + H+) R06569 (5-Hydroxyferuloyl-CoA + NADPH + H+ <=> 5-Hydroxyconiferaldehyde + CoA + NADP+)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G15950.7	-
RefSeq	XP_017218686.1	PREDICTED: cinnamoyl-CoA reductase 1-like [Daucus carota subsp. sativus]
Swiss-Prot	A0A072VDF2	Cinnamoyl-CoA reductase 1 OS=Medicago truncatula OX=3880 GN=CCR1 PE=1 SV=1
TrEMBL	A0A161ZMC7	Cinnamoyl-CoA reductase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025567 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.503338	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.746959	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.347796	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.359203	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.592127	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.652142	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.787023	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.025824		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_22127
Amaranthaceae	Atriplex hortensis	1	Ah017756
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg50255
Amaranthaceae	Salicornia europaea	1	Seu_jg1843
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011419
Amaranthaceae	Suaeda glauca	2	Sgl41640, Sgl46439
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009716, gene:ENSEOMG00000034721 ... gene:ENSEOMG00000047769
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.8AG0003010
Anacardiaceae	Pistacia vera	3	pistato.v30075310, pistato.v30293470, pistato.v30293480
Apiaceae	Apium graveolens	1	Ag10G00741
Arecaceae	Cocos nucifera	3	COCNU_04G008100, scaffold012456G000010 ... scaffold088684G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103698208
Asparagaceae	Asparagus officinalis	2	AsparagusV1_08.2625.V1.1, AsparagusV1_Unassigned.487.V1.1
Brassicaceae	Arabidopsis thaliana	1	AT1G61720.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10023567m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g02830.v2.2
Brassicaceae	Brassica nigra	4	BniB02g059260.2N, BniB07g002050.2N, BniB07g002080.2N ... BniB07g047610.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G1534
Casuarinaceae	Casuarina glauca	1	Cgl04G1705
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g00430, gene.Cymno17g06170
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g29390
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.631
Plumbaginaceae	Limonium bicolor	2	Lb4G22873, Lb4G25052
Poaceae	Echinochloa crus-galli	16	AH09.2386, AH09.2387, AH09.2388, AH09.2389, AH09.2390 ... BH09.2594, BH09.2596, BH09.2597, BH09.2599, BH09.2600, BH09.2602, BH09.2603, CH05.128, CH09.2826, CH09.2827, CH09.2828
Poaceae	Eleusine coracana subsp. coracana	15	gene-QOZ80_1AG0007110, gene-QOZ80_1BG0055850 ... gene-QOZ80_4AG0302830, gene-QOZ80_4AG0302840, gene-QOZ80_4AG0302850, gene-QOZ80_4AG0302860, gene-QOZ80_4AG0302880, gene-QOZ80_4AG0302890, gene-QOZ80_4AG0302920, gene-QOZ80_4BG0333720, gene-QOZ80_4BG0333730, gene-QOZ80_4BG0333740, gene-QOZ80_4BG0333750, gene-QOZ80_4BG0333760, gene-QOZ80_4BG0333780
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0199330.1, HORVU.MOREX.r3.2HG0199350.1 ... HORVU.MOREX.r3.2HG0199370.1, HORVU.MOREX.r3.2HG0199400.1, HORVU.MOREX.r3.2HG0199420.1, HORVU.MOREX.r3.2HG0199430.1, HORVU.MOREX.r3.2HG0214200.1
Poaceae	Lolium multiflorum	10	gene-QYE76_001621, gene-QYE76_001700, gene-QYE76_041950 ... gene-QYE76_044316, gene-QYE76_046467, gene-QYE76_046472, gene-QYE76_046473, gene-QYE76_046474, gene-QYE76_046475, gene-QYE76_046478
Poaceae	Oryza coarctata	5	Oco07G016750, Oco07G016760, Oco08G016160, Oco19G006100 ... Oco20G006000
Poaceae	Oryza sativa	8	LOC_Os04g53780.1, LOC_Os04g53800.1, LOC_Os04g53810.1 ... LOC_Os04g53830.1, LOC_Os04g53850.1, LOC_Os04g53860.1, LOC_Os04g53920.1, LOC_Os10g33774.1
Poaceae	Paspalum vaginatum	9	gene-BS78_06G240300, gene-BS78_06G240400 ... gene-BS78_06G240500, gene-BS78_06G240600, gene-BS78_06G240700, gene-BS78_06G240900, gene-BS78_06G241000, gene-BS78_06G241100, gene-BS78_06G241500
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0300953, Pt_Chr0300956, Pt_Chr0300957, Pt_Chr0300958 ... Pt_Chr0300981, Pt_Chr0300985, Pt_Chr0306140, Pt_Chr0306161
Poaceae	Sporobolus alterniflorus	5	Chr23G005090, Chr25G002620, Chr25G002630, Chr26G016210 ... Chr30G003010
Poaceae	Thinopyrum elongatum	15	Tel2E01G104200, Tel2E01G813500, Tel2E01G814800 ... Tel2E01G814900, Tel2E01G815000, Tel2E01G815100, Tel2E01G815200, Tel2E01G815300, Tel2E01G815500, Tel2E01G815800, Tel2E01G815900, Tel2E01G816200, Tel2E01G816300, Tel2E01G816600, Tel2E01G817500
Poaceae	Triticum dicoccoides	17	gene_TRIDC2AG004580, gene_TRIDC2AG068050 ... gene_TRIDC2AG068060, gene_TRIDC2AG068070, gene_TRIDC2AG068080, gene_TRIDC2AG068110, gene_TRIDC2AG068120, gene_TRIDC2AG068150, gene_TRIDC2AG068160, gene_TRIDC2AG079500, gene_TRIDC2BG073430, gene_TRIDC2BG073440, gene_TRIDC2BG073450, gene_TRIDC2BG073480, gene_TRIDC2BG073500, gene_TRIDC2BG073510, gene_TRIDC2BG073560
Poaceae	Triticum aestivum	43	TraesCS2A02G481200.1, TraesCS2A02G481300.1 ... TraesCS2A02G481400.1, TraesCS2A02G481500.1, TraesCS2A02G481700.1, TraesCS2A02G481800.1, TraesCS2A02G481900.1, TraesCS2A02G482100.1, TraesCS2A02G482200.1, TraesCS2A02G482300.1, TraesCS2A02G483100.1, TraesCS2A02G579200.1, TraesCS2A02G579300.1, TraesCS2A02G579400.1, TraesCS2A02G579500.1, TraesCS2A02G579600.1, TraesCS2B02G055100.1, TraesCS2B02G507300.1, TraesCS2B02G507500.1, TraesCS2B02G507600.1, TraesCS2B02G507700.1, TraesCS2B02G507800.2, TraesCS2B02G508000.1, TraesCS2B02G508100.1, TraesCS2B02G508300.1, TraesCS2B02G508400.1, TraesCS2B02G508500.1, TraesCS2B02G508700.1, TraesCS2B02G606800.1, TraesCS2B02G612700.1, TraesCS2B02G612800.1, TraesCS2D02G481500.1, TraesCS2D02G481600.1, TraesCS2D02G481700.1, TraesCS2D02G481800.1, TraesCS2D02G481900.2, TraesCS2D02G482000.2, TraesCS2D02G482100.1, TraesCS2D02G482200.1, TraesCS2D02G482400.1, TraesCS2D02G483100.1, TraesCS2D02G500300.2, TraesCS2D02G598900.1
Poaceae	Zea mays	4	Zm00001eb276450_P001, Zm00001eb431500_P001 ... Zm00001eb431510_P002, Zm00001eb431520_P001
Poaceae	Zoysia japonica	6	nbis-gene-22934, nbis-gene-22935, nbis-gene-22936 ... nbis-gene-5925, nbis-gene-5926, nbis-gene-5927
Poaceae	Zoysia macrostachya	6	Zma_g20503, Zma_g20504, Zma_g20505, Zma_g22021, Zma_g22022 ... Zma_g22023
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.777, evm.TU.LG20.1122
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g01270
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_12_RagTag.958
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-23887
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-9995
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21666
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000027l.63
Rhizophoraceae	Kandelia obovata	1	Maker00017419
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-10680
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23237
Salicaceae	Populus euphratica	2	populus_peu10197, populus_peu18344
Solanaceae	Lycium barbarum	1	gene-LOC132617081
Solanaceae	Solanum chilense	1	SOLCI006791800
Solanaceae	Solanum pennellii	1	gene-LOC107012467
Tamaricaceae	Reaumuria soongarica	1	STRG.26673_chr04_+
Tamaricaceae	Tamarix chinensis	1	TC08G0331
Zosteraceae	Zostera marina	1	Zosma06g27600.v3.1