Basic Information
Locus ID:
Ag10G00728
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 133224970 | 133319386 | + | Ag10G00728 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 28,063.40 Da | 35.08 | 102.60 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02725.2 | 0 | |
| RefSeq | XP_017242790.1 | PREDICTED: uncharacterized protein LOC108215001 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | R0H9L8 | DUF6737 domain-containing protein (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v10002075mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.780206 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.044951 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.976283 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.598498 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.58902 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.852289 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.265601 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.113434 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.618122 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.741364 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.331993 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.15111 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.437283 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.507595 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.071531 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.584791 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.377573 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.3416 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.335281 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.219561 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.434671 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.98356 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.3543 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.055542 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.101828 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.47863 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.482958 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.976212 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.521866 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.165774 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.047026 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.371658 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.899142 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.018471 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.433808 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.58778 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.107465 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.652656 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 48.53978 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 44.456329 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 77.98806 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.601879 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.877104 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.418911 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.529653 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.454594 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.998223 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.705011 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.542324 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.531414 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37860 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19414 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000374 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119320 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg30721, Sbi_jg58542, Sbi_jg58545 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28414 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004977 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55024, Sgl60279 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006882, gene:ENSEOMG00000020893 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024850, CQ.Regalona.r1.5BG0026290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027040 |
| Apiaceae | Apium graveolens | 1 | Ag10G00728 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721442 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G03715 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02725.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029025m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g02670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g055230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2217 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g02560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0002s00050.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1084 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.932, BH01.1063 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0220040, gene-QOZ80_3BG0265260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0335980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062737 |
| Poaceae | Oryza coarctata | 2 | Oco05G021030, Oco06G021880 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G113300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0207452 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G007580, Chr04G026460, Chr07G025450 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G072100, Tel5E01G732000 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3BG045690, gene_TRIDC4AG042730 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4A02G275200.1, TraesCS4B02G038700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb054110_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g699 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1073, evm.TU.LG09.900 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.994 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11353 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18839 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11608 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.311 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013364 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9978 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7612 |
| Salicaceae | Populus euphratica | 1 | populus_peu15050 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610934 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031422 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2217_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0793 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32300.v3.1 |