halophFGD

Basic Information

Locus ID: Ag10G00718

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Type I inositol 1,4,5-trisphosphate 5-phosphatase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	132598025	132601133	+	Ag10G00718

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.10	31,063.69 Da	37.89	98.19	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	50	160	4.5E-11	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	14	173	2.97E-24	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	105	215	3.6E-32	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	19	91	2.6E-26	-
SMART	SM00220	serkin_6	8	281	0.0021	IPR000719
TIGRFAM	TIGR03724	arch_bud32: Kae1-associated kinase Bud32	14	211	1.6E-56	IPR022495
ProSiteProfiles	PS50011	Protein kinase domain profile.	8	281	12.697292	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004674 (protein serine/threonine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K01099 (inositol polyphosphate 5-phosphatase INPP5B/F [EC:3.1.3.36])

Pathway:

ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko04070 (Phosphatidylinositol signaling system) map04070 (Phosphatidylinositol signaling system)

Reaction:

R04404 (1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 4-phosphate + Orthophosphate) R09827 (Phosphatidylinositol-3,4,5-trisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G26110.1	Protein kinase superfamily protein.
RefSeq	XP_017237192.1	PREDICTED: EKC/KEOPS complex subunit bud32-like [Daucus carota subsp. sativus]
Swiss-Prot	Q54W07	EKC/KEOPS complex subunit bud32 OS=Dictyostelium discoideum OX=44689 GN=bud32 PE=3 SV=1
TrEMBL	A0A166CGD8	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012498 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	18.983902	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	19.215244	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.937293	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	18.982538	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.298658	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.370476	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	14.538015	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.441793	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	61.062584	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	67.168312	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	63.929604	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	58.616264	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	55.038124	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	47.688309	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.362188	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	19.561815	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	20.345297	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	30.312893	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.554546	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	44.819321	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	50.163231	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	30.509275	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	27.00618	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	33.360867	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	32.660225	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	29.80031	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	26.788633	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	29.512611	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	25.024998	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	28.673811		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	34.546391		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	34.742779		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	28.624109		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	36.090858		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	38.870003		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	44.765614		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	33.467369		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	28.31492		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	47.029839	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	33.721245	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	19.741819	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	48.151379	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	37.674343	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	74.427238	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	81.598877	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	61.441586	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	51.293594	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	55.937241	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	55.399643	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	52.887394	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg10484, jg35329
Aizoaceae	Mesembryanthemum crystallinum	1	gene_12037
Amaranthaceae	Atriplex hortensis	1	Ah000342
Amaranthaceae	Beta vulgaris	1	BVRB_5g119680
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg28893, Sbi_jg3047
Amaranthaceae	Salicornia europaea	1	Seu_jg6855
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000912, GOSA_00000913
Amaranthaceae	Suaeda glauca	3	Sgl11706, Sgl11866, Sgl16999
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005775, gene:ENSEOMG00000021230 ... gene:ENSEOMG00000022596
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5BG0026580, CQ.Regalona.r1.8AG0003340
Anacardiaceae	Pistacia vera	1	pistato.v30026860
Apiaceae	Apium graveolens	2	Ag10G00718, Ag9G02125
Arecaceae	Cocos nucifera	1	COCNU_08G001050
Arecaceae	Phoenix dactylifera	1	gene-LOC103723805
Asteraceae	Flaveria trinervia	1	Ftri11G09166
Brassicaceae	Arabidopsis thaliana	2	AT1G08120.1, AT5G26110.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10004885m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21620.v2.2, Sp5g00290.v2.2
Brassicaceae	Brassica nigra	2	BniB02g008050.2N, BniB02g078430.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0319, Ceq06G2088
Casuarinaceae	Casuarina glauca	1	Cgl06G2201
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g00870
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g28580
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6313
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG06.1531, evm.TU.LG06.1534, evm.TU.LG06.1535
Plantaginaceae	Plantago ovata	2	Pov_00007540, Pov_00007919
Plumbaginaceae	Limonium bicolor	3	Lb2G12749, Lb2G12789, Lb7G32702
Poaceae	Echinochloa crus-galli	3	AH01.1882, BH01.2357, CH01.2442
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_2AG0124920
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0298190.1
Poaceae	Lolium multiflorum	1	gene-QYE76_056849
Poaceae	Oryza coarctata	2	Oco19G004500, Oco20G004470
Poaceae	Oryza sativa	1	LOC_Os10g28640.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G230900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204288, Pt_Chr0600034
Poaceae	Sporobolus alterniflorus	4	Chr06G014020, Chr09G009420, Chr13G015650, Chr15G014820
Poaceae	Thinopyrum elongatum	1	Tel3E01G616000
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG055480, gene_TRIDC3BG061930
Poaceae	Triticum aestivum	2	TraesCS3A02G389300.1, TraesCS3D02G380300.1
Poaceae	Zea mays	3	Zm00001eb031460_P001, Zm00001eb222890_P001 ... Zm00001eb432290_P001
Poaceae	Zoysia japonica	2	nbis-gene-28003, nbis-gene-48004
Poaceae	Zoysia macrostachya	2	Zma_g13266, Zma_g16062
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2329, evm.TU.LG14.1498
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g01890
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_5_RagTag.1012
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11335, nbisL1-mrna-21273
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4219, nbisL1-mrna-7393
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-18376, nbisL1-mrna-18377
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.513, evm.TU.utg000006l.320
Rhizophoraceae	Kandelia obovata	2	Maker00009242, Maker00014026
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-9968
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-5120, nbisL1-mrna-7632
Salicaceae	Populus euphratica	2	populus_peu15071, populus_peu32736
Solanaceae	Lycium barbarum	2	gene-LOC132603538, gene-LOC132608020
Solanaceae	Solanum chilense	2	SOLCI002233100, SOLCI002820300
Solanaceae	Solanum pennellii	2	gene-LOC107021082, gene-LOC107027004
Tamaricaceae	Reaumuria soongarica	1	gene_1696
Tamaricaceae	Tamarix chinensis	2	TC01G0830, TC08G0858
Zosteraceae	Zostera marina	1	Zosma05g13720.v3.1